Class: MultiNodeObsoletion

A complex change consisting of multiple obsoletions.

classDiagram class MultiNodeObsoletion click MultiNodeObsoletion href "../MultiNodeObsoletion" ComplexChange <|-- MultiNodeObsoletion click ComplexChange href "../ComplexChange" MultiNodeObsoletion : associated_change_set MultiNodeObsoletion --> "*" Change : associated_change_set click Change href "../Change" MultiNodeObsoletion : change_date MultiNodeObsoletion : change_description MultiNodeObsoletion : change_set MultiNodeObsoletion --> "*" NodeObsoletion : change_set click NodeObsoletion href "../NodeObsoletion" MultiNodeObsoletion : contributor MultiNodeObsoletion : creator MultiNodeObsoletion : has_undo MultiNodeObsoletion --> "0..1" Change : has_undo click Change href "../Change" MultiNodeObsoletion : id MultiNodeObsoletion : pull_request MultiNodeObsoletion : see_also MultiNodeObsoletion : term_tracker_issue MultiNodeObsoletion : type MultiNodeObsoletion : was_generated_by MultiNodeObsoletion --> "0..1" Activity : was_generated_by click Activity href "../Activity"

Inheritance

ChangeLanguageElement
- Change
  - ComplexChange
    - MultiNodeObsoletion

Slots

Name	Cardinality and Range	Description	Inheritance
change_set	* NodeObsoletion	A collection of changes	ComplexChange
id	1 String		Change
type	0..1 String		Change
was_generated_by	0..1 Activity		Change
see_also	0..1 String		Change
pull_request	0..1 String		Change
term_tracker_issue	0..1 String		Change
creator	0..1 String		Change
change_date	0..1 String		Change
contributor	0..1 String		Change
has_undo	0..1 Change	A change that reverses this change	Change
change_description	0..1 String	A string serialization of the change	Change
associated_change_set	* Change	All changes associated with a set of obsoletions	Change

Aliases

multi node deprecation
multi class obsoletion
multi term obsoletion
multi concept obsoletion

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/kgcl

Mappings

Mapping Type	Mapped Value
self	kgcl:MultiNodeObsoletion
native	kgcl:MultiNodeObsoletion

LinkML Source

Direct

name: MultiNodeObsoletion
description: A complex change consisting of multiple obsoletions.
from_schema: https://w3id.org/kgcl
see_also:
- https://github.com/cmungall/obo-scripts/blob/master/obo-obsoletify.pl
aliases:
- multi node deprecation
- multi class obsoletion
- multi term obsoletion
- multi concept obsoletion
is_a: ComplexChange
slot_usage:
  change_set:
    name: change_set
    range: NodeObsoletion
  change_description:
    name: change_description
    string_serialization: obsolete multiple {change set}
  associated_change_set:
    name: associated_change_set
    description: All changes associated with a set of obsoletions. This change set
      is the composed change set rather than the set of individual changes. For example,
      if previous state is:\n  `A subClassOf B subClassOf C subClassOf D` and we obsolete
      {B,C}, then the individual changes are `A moves from B to C` and `B moves from
      C to D`, but the composed change set is `A moves from B to D`"

Induced

name: MultiNodeObsoletion
description: A complex change consisting of multiple obsoletions.
from_schema: https://w3id.org/kgcl
see_also:
- https://github.com/cmungall/obo-scripts/blob/master/obo-obsoletify.pl
aliases:
- multi node deprecation
- multi class obsoletion
- multi term obsoletion
- multi concept obsoletion
is_a: ComplexChange
slot_usage:
  change_set:
    name: change_set
    range: NodeObsoletion
  change_description:
    name: change_description
    string_serialization: obsolete multiple {change set}
  associated_change_set:
    name: associated_change_set
    description: All changes associated with a set of obsoletions. This change set
      is the composed change set rather than the set of individual changes. For example,
      if previous state is:\n  `A subClassOf B subClassOf C subClassOf D` and we obsolete
      {B,C}, then the individual changes are `A moves from B to C` and `B moves from
      C to D`, but the composed change set is `A moves from B to D`"
attributes:
  change_set:
    name: change_set
    description: A collection of changes
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: change_set
    owner: MultiNodeObsoletion
    domain_of:
    - ComplexChange
    - Transaction
    - Session
    range: NodeObsoletion
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    from_schema: https://w3id.org/kgcl
    rank: 1000
    identifier: true
    alias: id
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    - Node
    - Activity
    - Agent
    range: string
    required: true
  type:
    name: type
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  was_generated_by:
    name: was_generated_by
    comments:
    - we use the PROV model to represent the agent making a change
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: Activity
  see_also:
    name: see_also
    comments:
    - If this change is in relationship to an issue on a system like github, include
      the URL here
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: rdfs:seeAlso
    alias: see_also
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  pull_request:
    name: pull_request
    comments:
    - If this change has a pull request on a system like github, include the URL here
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: pull_request
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  term_tracker_issue:
    name: term_tracker_issue
    comments:
    - If this change has an issue on a system like github, include the URL here
    from_schema: https://w3id.org/kgcl
    exact_mappings:
    - IAO:0000233
    rank: 1000
    alias: term_tracker_issue
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  creator:
    name: creator
    comments:
    - This should be the composition of 'was generated by' and 'was associated with'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:creator
    alias: creator
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  change_date:
    name: change_date
    comments:
    - This should be the composition of 'was generated by' and 'ended at time'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:date
    alias: change_date
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  contributor:
    name: contributor
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:creator
    alias: contributor
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  has_undo:
    name: has_undo
    description: A change that reverses this change
    from_schema: https://w3id.org/kgcl
    rank: 1000
    domain: Change
    alias: has_undo
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    - ChangeMixin
    range: Change
    multivalued: false
  change_description:
    name: change_description
    description: A string serialization of the change. This should be both human-readable,
      and parseable.
    comments:
    - '{''Form 1'': ''IRIs are denoted by CURIEs, optionally followed by label in
      parenthesis''}'
    - '{''Form 2'': "IRIs are denoted by the rdfs:label in single quotes, e.g. ''nervous
      system''"}'
    examples:
    - value: rename UBERON:0002398 from 'manus' to 'hand'
    - value: move 'hand' from 'part of' 'hindlimb' to 'part of' 'forelimb'
    - value: merge 'cellular metabolic process' into 'metabolic process'
    - value: search and replace 'metabolic process' with 'metabolism' in all labels
        under 'biological process'
    - value: search and replace 'metabolic process' with 'metabolism' in all labels
        under 'biological process' retaining as 'exact synonym'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    string_serialization: obsolete multiple {change set}
    alias: change_description
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: string
  associated_change_set:
    name: associated_change_set
    description: All changes associated with a set of obsoletions. This change set
      is the composed change set rather than the set of individual changes. For example,
      if previous state is:\n  `A subClassOf B subClassOf C subClassOf D` and we obsolete
      {B,C}, then the individual changes are `A moves from B to C` and `B moves from
      C to D`, but the composed change set is `A moves from B to D`"
    from_schema: https://w3id.org/kgcl
    rank: 1000
    is_a: change_set
    alias: associated_change_set
    owner: MultiNodeObsoletion
    domain_of:
    - Change
    range: Change
    multivalued: true
    inlined: true
    inlined_as_list: true