Class: NodeAnnotationReplacement

A node annotation change where the change replaces a particular property value. TODO

classDiagram class NodeAnnotationReplacement click NodeAnnotationReplacement href "../NodeAnnotationReplacement" NodeAnnotationChange <|-- NodeAnnotationReplacement click NodeAnnotationChange href "../NodeAnnotationChange" NodeAnnotationReplacement : about_node NodeAnnotationReplacement --> "0..1" Node : about_node click Node href "../Node" NodeAnnotationReplacement : about_node_representation NodeAnnotationReplacement : annotation_property NodeAnnotationReplacement : annotation_property_type NodeAnnotationReplacement : associated_change_set NodeAnnotationReplacement --> "*" Change : associated_change_set click Change href "../Change" NodeAnnotationReplacement : change_date NodeAnnotationReplacement : change_description NodeAnnotationReplacement : contributor NodeAnnotationReplacement : creator NodeAnnotationReplacement : has_undo NodeAnnotationReplacement --> "0..1" Change : has_undo click Change href "../Change" NodeAnnotationReplacement : id NodeAnnotationReplacement : language NodeAnnotationReplacement : new_datatype NodeAnnotationReplacement : new_language NodeAnnotationReplacement : new_value NodeAnnotationReplacement : new_value_type NodeAnnotationReplacement : old_datatype NodeAnnotationReplacement : old_language NodeAnnotationReplacement : old_value NodeAnnotationReplacement : old_value_type NodeAnnotationReplacement : pull_request NodeAnnotationReplacement : see_also NodeAnnotationReplacement : term_tracker_issue NodeAnnotationReplacement : type NodeAnnotationReplacement : was_generated_by NodeAnnotationReplacement --> "0..1" Activity : was_generated_by click Activity href "../Activity"

Inheritance

ChangeLanguageElement
- Change
  - SimpleChange
    - NodeChange
      - NodeAnnotationChange
        
        NodeAnnotationReplacement

Slots

Name	Cardinality and Range	Description	Inheritance
annotation_property	0..1 String	An annotation property	NodeAnnotationChange
annotation_property_type	0..1 String	The type of a property (URI, CURIE, label)	NodeAnnotationChange
about_node	0..1 Node		NodeChange
about_node_representation	0..1 String	The representation of a node (URI, CURIE, label)	NodeChange
language	0..1 LanguageTag	The language tag of a literal	NodeChange
old_value	0..1 String	The value of a property held in the old instance of the ontology	SimpleChange
new_value	0..1 String	The value of a property held in the new instance of the ontology	SimpleChange
old_value_type	0..1 String	The type (IRI or Literal) of an old value	SimpleChange
new_value_type	0..1 String	The type (IRI or Literal) of a new value	SimpleChange
new_language	0..1 String	The new language tag of a literal	SimpleChange
old_language	0..1 String	The old language tag of a literal	SimpleChange
new_datatype	0..1 String	The new datatype of a literal	SimpleChange
old_datatype	0..1 String	The old datatype of a literal	SimpleChange
id	1 String		Change
type	0..1 String		Change
was_generated_by	0..1 Activity		Change
see_also	0..1 String		Change
pull_request	0..1 String		Change
term_tracker_issue	0..1 String		Change
creator	0..1 String		Change
change_date	0..1 String		Change
contributor	0..1 String		Change
has_undo	0..1 Change	A change that reverses this change	Change
change_description	0..1 String	A string serialization of the change	Change
associated_change_set	* Change	All changes forced as a result of this obsoletion	Change

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/kgcl

Mappings

Mapping Type	Mapped Value
self	kgcl:NodeAnnotationReplacement
native	kgcl:NodeAnnotationReplacement

LinkML Source

Direct

name: NodeAnnotationReplacement
description: A node annotation change where the change replaces a particular property
  value. TODO
from_schema: https://w3id.org/kgcl
is_a: NodeAnnotationChange

Induced

name: NodeAnnotationReplacement
description: A node annotation change where the change replaces a particular property
  value. TODO
from_schema: https://w3id.org/kgcl
is_a: NodeAnnotationChange
attributes:
  annotation_property:
    name: annotation_property
    description: An annotation property
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: annotation_property
    owner: NodeAnnotationReplacement
    domain_of:
    - NodeAnnotationChange
    range: string
  annotation_property_type:
    name: annotation_property_type
    description: 'The type of a property (URI, CURIE, label) '
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: annotation_property_type
    owner: NodeAnnotationReplacement
    domain_of:
    - NodeAnnotationChange
    range: string
  about_node:
    name: about_node
    from_schema: https://w3id.org/kgcl
    rank: 1000
    is_a: about
    alias: about_node
    owner: NodeAnnotationReplacement
    domain_of:
    - NodeChange
    range: Node
    multivalued: false
  about_node_representation:
    name: about_node_representation
    description: 'The representation of a node (URI, CURIE, label) '
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: about_node_representation
    owner: NodeAnnotationReplacement
    domain_of:
    - NodeChange
    range: string
  language:
    name: language
    description: The language tag of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: language
    owner: NodeAnnotationReplacement
    domain_of:
    - EdgeChange
    - NodeChange
    - NewSynonym
    - NodeCreation
    range: LanguageTag
  old_value:
    name: old_value
    description: The value of a property held in the old instance of the ontology
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_value
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    - ChangeMixin
    - NodeRename
    - SetLanguageForName
    - RemoveSynonym
    - SynonymReplacement
    - SynonymPredicateChange
    - MappingReplacement
    - MappingPredicateChange
    - MetadataAssertionReplacement
    - MetadataAssertionPredicateChange
    - RemoveTextDefinition
    - TextDefinitionReplacement
    range: string
  new_value:
    name: new_value
    description: The value of a property held in the new instance of the ontology
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_value
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    - ChangeMixin
    - NodeRename
    - SetLanguageForName
    - NewSynonym
    - SynonymReplacement
    - SynonymPredicateChange
    - MappingReplacement
    - MappingPredicateChange
    - MetadataAssertionReplacement
    - MetadataAssertionPredicateChange
    - NewTextDefinition
    - TextDefinitionReplacement
    range: string
  old_value_type:
    name: old_value_type
    description: The type (IRI or Literal) of an old value
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_value_type
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    range: string
  new_value_type:
    name: new_value_type
    description: The type (IRI or Literal) of a new value
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_value_type
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    range: string
  new_language:
    name: new_language
    description: The new language tag of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_language
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    - NodeRename
    range: string
  old_language:
    name: old_language
    description: The old language tag of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_language
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    - NodeRename
    range: string
  new_datatype:
    name: new_datatype
    description: The new datatype of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_datatype
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    range: string
  old_datatype:
    name: old_datatype
    description: The old datatype of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_datatype
    owner: NodeAnnotationReplacement
    domain_of:
    - SimpleChange
    range: string
  id:
    name: id
    from_schema: https://w3id.org/kgcl
    rank: 1000
    identifier: true
    alias: id
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    - Node
    - Activity
    - Agent
    range: string
    required: true
  type:
    name: type
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  was_generated_by:
    name: was_generated_by
    comments:
    - we use the PROV model to represent the agent making a change
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: Activity
  see_also:
    name: see_also
    comments:
    - If this change is in relationship to an issue on a system like github, include
      the URL here
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: rdfs:seeAlso
    alias: see_also
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  pull_request:
    name: pull_request
    comments:
    - If this change has a pull request on a system like github, include the URL here
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: pull_request
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  term_tracker_issue:
    name: term_tracker_issue
    comments:
    - If this change has an issue on a system like github, include the URL here
    from_schema: https://w3id.org/kgcl
    exact_mappings:
    - IAO:0000233
    rank: 1000
    alias: term_tracker_issue
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  creator:
    name: creator
    comments:
    - This should be the composition of 'was generated by' and 'was associated with'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:creator
    alias: creator
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  change_date:
    name: change_date
    comments:
    - This should be the composition of 'was generated by' and 'ended at time'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:date
    alias: change_date
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  contributor:
    name: contributor
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:creator
    alias: contributor
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  has_undo:
    name: has_undo
    description: A change that reverses this change
    from_schema: https://w3id.org/kgcl
    rank: 1000
    domain: Change
    alias: has_undo
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    - ChangeMixin
    range: Change
    multivalued: false
  change_description:
    name: change_description
    description: A string serialization of the change. This should be both human-readable,
      and parseable.
    comments:
    - '{''Form 1'': ''IRIs are denoted by CURIEs, optionally followed by label in
      parenthesis''}'
    - '{''Form 2'': "IRIs are denoted by the rdfs:label in single quotes, e.g. ''nervous
      system''"}'
    examples:
    - value: rename UBERON:0002398 from 'manus' to 'hand'
    - value: move 'hand' from 'part of' 'hindlimb' to 'part of' 'forelimb'
    - value: merge 'cellular metabolic process' into 'metabolic process'
    - value: search and replace 'metabolic process' with 'metabolism' in all labels
        under 'biological process'
    - value: search and replace 'metabolic process' with 'metabolism' in all labels
        under 'biological process' retaining as 'exact synonym'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: change_description
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: string
  associated_change_set:
    name: associated_change_set
    description: 'All changes forced as a result of this obsoletion. For example,
      starting with `A subClassOf B subClassOf C`, if we obsolete node B, then we
      may decide to bundle in a node move change of A from B to C. Note: this change
      set is not considered a part of the obsoletion, as obsoletion is considered
      atomic/simple. Instead this is a reference to a change set that may exist elsewhere'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    is_a: change_set
    alias: associated_change_set
    owner: NodeAnnotationReplacement
    domain_of:
    - Change
    range: Change
    multivalued: true
    inlined: true
    inlined_as_list: true