Class: NodeCreation
a node change in which a new node is created
URI: kgcl:NodeCreation
classDiagram
class NodeCreation
click NodeCreation href "../NodeCreation"
Creation <|-- NodeCreation
click Creation href "../Creation"
NodeChange <|-- NodeCreation
click NodeChange href "../NodeChange"
NodeCreation <|-- ClassCreation
click ClassCreation href "../ClassCreation"
NodeCreation <|-- ObjectPropertyCreation
click ObjectPropertyCreation href "../ObjectPropertyCreation"
NodeCreation : about
NodeCreation --> "0..1" OntologyElement : about
click OntologyElement href "../OntologyElement"
NodeCreation : about_node
NodeCreation --> "0..1" Node : about_node
click Node href "../Node"
NodeCreation : about_node_representation
NodeCreation : annotation_set
NodeCreation --> "0..1" Annotation : annotation_set
click Annotation href "../Annotation"
NodeCreation : associated_change_set
NodeCreation --> "*" Change : associated_change_set
click Change href "../Change"
NodeCreation : change_date
NodeCreation : change_description
NodeCreation : contributor
NodeCreation : creator
NodeCreation : has_undo
NodeCreation --> "0..1" Deletion : has_undo
click Deletion href "../Deletion"
NodeCreation : id
NodeCreation : language
NodeCreation : name
NodeCreation : new_datatype
NodeCreation : new_language
NodeCreation : new_value
NodeCreation : new_value_type
NodeCreation : node_id
NodeCreation --> "0..1" Node : node_id
click Node href "../Node"
NodeCreation : old_datatype
NodeCreation : old_language
NodeCreation : old_value
NodeCreation : old_value_type
NodeCreation : owl_type
NodeCreation --> "0..1" OwlTypeEnum : owl_type
click OwlTypeEnum href "../OwlTypeEnum"
NodeCreation : pull_request
NodeCreation : see_also
NodeCreation : term_tracker_issue
NodeCreation : type
NodeCreation : was_generated_by
NodeCreation --> "0..1" Activity : was_generated_by
click Activity href "../Activity"
Inheritance
- ChangeLanguageElement
- Change
- SimpleChange
- NodeChange
- NodeCreation [ Creation]
- NodeChange
- SimpleChange
- Change
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
node_id | 0..1 Node |
id of a node to be created | direct |
name | 0..1 String |
direct | |
owl_type | 0..1 OwlTypeEnum |
direct | |
annotation_set | 0..1 Annotation |
direct | |
language | 0..1 LanguageTag |
The language tag of a literal | direct |
about_node | 0..1 Node |
NodeChange | |
about_node_representation | 0..1 String |
The representation of a node (URI, CURIE, label) | NodeChange |
old_value | 0..1 String |
The value of a property held in the old instance of the ontology | ChangeMixin, SimpleChange |
new_value | 0..1 String |
The value of a property held in the new instance of the ontology | ChangeMixin, SimpleChange |
old_value_type | 0..1 String |
The type (IRI or Literal) of an old value | SimpleChange |
new_value_type | 0..1 String |
The type (IRI or Literal) of a new value | SimpleChange |
new_language | 0..1 String |
The new language tag of a literal | SimpleChange |
old_language | 0..1 String |
The old language tag of a literal | SimpleChange |
new_datatype | 0..1 String |
The new datatype of a literal | SimpleChange |
old_datatype | 0..1 String |
The old datatype of a literal | SimpleChange |
id | 1 String |
Change | |
type | 0..1 String |
Change | |
was_generated_by | 0..1 Activity |
Change | |
see_also | 0..1 String |
Change | |
pull_request | 0..1 String |
Change | |
term_tracker_issue | 0..1 String |
Change | |
creator | 0..1 String |
Change | |
change_date | 0..1 String |
Change | |
contributor | 0..1 String |
Change | |
has_undo | 0..1 Deletion |
A change that reverses this change | ChangeMixin, Change |
change_description | 0..1 String |
A string serialization of the change | Change |
associated_change_set | * Change |
All changes forced as a result of this obsoletion | Change |
about | 0..1 OntologyElement |
The 'focus' entity on which the change operates | ChangeMixin |
TODOs
- allow this for the creation of an instance from a class. This may include metaclasses (templates)
See Also
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/kgcl
Mappings
Mapping Type | Mapped Value |
---|---|
self | kgcl:NodeCreation |
native | kgcl:NodeCreation |
LinkML Source
Direct
name: NodeCreation
description: a node change in which a new node is created
todos:
- allow this for the creation of an instance from a class. This may include metaclasses
(templates)
from_schema: https://w3id.org/kgcl
see_also:
- http://wiki.geneontology.org/index.php/Guidelines_for_creating_a_GO_term
is_a: NodeChange
mixins:
- Creation
slots:
- node_id
- name
- owl_type
- annotation_set
- language
slot_usage:
change_description:
name: change_description
string_serialization: creating node {id} {label} with {annotation set}
Induced
name: NodeCreation
description: a node change in which a new node is created
todos:
- allow this for the creation of an instance from a class. This may include metaclasses
(templates)
from_schema: https://w3id.org/kgcl
see_also:
- http://wiki.geneontology.org/index.php/Guidelines_for_creating_a_GO_term
is_a: NodeChange
mixins:
- Creation
slot_usage:
change_description:
name: change_description
string_serialization: creating node {id} {label} with {annotation set}
attributes:
node_id:
name: node_id
description: id of a node to be created
todos:
- consider using 'about' instead
from_schema: https://w3id.org/kgcl
rank: 1000
alias: node_id
owner: NodeCreation
domain_of:
- NodeCreation
range: Node
name:
name: name
from_schema: https://w3id.org/kgcl
rank: 1000
alias: name
owner: NodeCreation
domain_of:
- NodeCreation
- Node
range: string
owl_type:
name: owl_type
from_schema: https://w3id.org/kgcl
rank: 1000
alias: owl_type
owner: NodeCreation
domain_of:
- NodeCreation
- Node
range: OwlTypeEnum
annotation_set:
name: annotation_set
from_schema: https://w3id.org/kgcl
rank: 1000
alias: annotation_set
owner: NodeCreation
domain_of:
- EdgeCreation
- EdgeDeletion
- EdgeObsoletion
- MappingCreation
- NodeCreation
- Annotation
- Node
- Edge
range: Annotation
language:
name: language
description: The language tag of a literal
from_schema: https://w3id.org/kgcl
rank: 1000
alias: language
owner: NodeCreation
domain_of:
- EdgeChange
- NodeChange
- NewSynonym
- NodeCreation
range: LanguageTag
about_node:
name: about_node
from_schema: https://w3id.org/kgcl
rank: 1000
is_a: about
alias: about_node
owner: NodeCreation
domain_of:
- NodeChange
range: Node
multivalued: false
about_node_representation:
name: about_node_representation
description: 'The representation of a node (URI, CURIE, label) '
deprecated: no longer required
from_schema: https://w3id.org/kgcl
rank: 1000
alias: about_node_representation
owner: NodeCreation
domain_of:
- NodeChange
range: string
old_value:
name: old_value
description: The value of a property held in the old instance of the ontology
from_schema: https://w3id.org/kgcl
rank: 1000
alias: old_value
owner: NodeCreation
domain_of:
- SimpleChange
- ChangeMixin
- NodeRename
- SetLanguageForName
- RemoveSynonym
- SynonymReplacement
- SynonymPredicateChange
- MappingReplacement
- MappingPredicateChange
- MetadataAssertionReplacement
- MetadataAssertionPredicateChange
- RemoveTextDefinition
- TextDefinitionReplacement
range: string
new_value:
name: new_value
description: The value of a property held in the new instance of the ontology
from_schema: https://w3id.org/kgcl
rank: 1000
alias: new_value
owner: NodeCreation
domain_of:
- SimpleChange
- ChangeMixin
- NodeRename
- SetLanguageForName
- NewSynonym
- SynonymReplacement
- SynonymPredicateChange
- MappingReplacement
- MappingPredicateChange
- MetadataAssertionReplacement
- MetadataAssertionPredicateChange
- NewTextDefinition
- TextDefinitionReplacement
range: string
old_value_type:
name: old_value_type
description: The type (IRI or Literal) of an old value
deprecated: no longer required
from_schema: https://w3id.org/kgcl
rank: 1000
alias: old_value_type
owner: NodeCreation
domain_of:
- SimpleChange
range: string
new_value_type:
name: new_value_type
description: The type (IRI or Literal) of a new value
deprecated: no longer required
from_schema: https://w3id.org/kgcl
rank: 1000
alias: new_value_type
owner: NodeCreation
domain_of:
- SimpleChange
range: string
new_language:
name: new_language
description: The new language tag of a literal
from_schema: https://w3id.org/kgcl
rank: 1000
alias: new_language
owner: NodeCreation
domain_of:
- SimpleChange
- NodeRename
range: string
old_language:
name: old_language
description: The old language tag of a literal
from_schema: https://w3id.org/kgcl
rank: 1000
alias: old_language
owner: NodeCreation
domain_of:
- SimpleChange
- NodeRename
range: string
new_datatype:
name: new_datatype
description: The new datatype of a literal
from_schema: https://w3id.org/kgcl
rank: 1000
alias: new_datatype
owner: NodeCreation
domain_of:
- SimpleChange
range: string
old_datatype:
name: old_datatype
description: The old datatype of a literal
from_schema: https://w3id.org/kgcl
rank: 1000
alias: old_datatype
owner: NodeCreation
domain_of:
- SimpleChange
range: string
id:
name: id
from_schema: https://w3id.org/kgcl
rank: 1000
identifier: true
alias: id
owner: NodeCreation
domain_of:
- Change
- Node
- Activity
- Agent
range: string
required: true
type:
name: type
from_schema: https://w3id.org/kgcl
rank: 1000
slot_uri: rdf:type
designates_type: true
alias: type
owner: NodeCreation
domain_of:
- Change
range: string
was_generated_by:
name: was_generated_by
comments:
- we use the PROV model to represent the agent making a change
from_schema: https://w3id.org/kgcl
rank: 1000
slot_uri: prov:wasGeneratedBy
alias: was_generated_by
owner: NodeCreation
domain_of:
- Change
range: Activity
see_also:
name: see_also
comments:
- If this change is in relationship to an issue on a system like github, include
the URL here
from_schema: https://w3id.org/kgcl
rank: 1000
slot_uri: rdfs:seeAlso
alias: see_also
owner: NodeCreation
domain_of:
- Change
range: string
pull_request:
name: pull_request
comments:
- If this change has a pull request on a system like github, include the URL here
from_schema: https://w3id.org/kgcl
rank: 1000
alias: pull_request
owner: NodeCreation
domain_of:
- Change
range: string
term_tracker_issue:
name: term_tracker_issue
comments:
- If this change has an issue on a system like github, include the URL here
from_schema: https://w3id.org/kgcl
exact_mappings:
- IAO:0000233
rank: 1000
alias: term_tracker_issue
owner: NodeCreation
domain_of:
- Change
range: string
creator:
name: creator
comments:
- This should be the composition of 'was generated by' and 'was associated with'
from_schema: https://w3id.org/kgcl
rank: 1000
slot_uri: dcterms:creator
alias: creator
owner: NodeCreation
domain_of:
- Change
range: string
change_date:
name: change_date
comments:
- This should be the composition of 'was generated by' and 'ended at time'
from_schema: https://w3id.org/kgcl
rank: 1000
slot_uri: dcterms:date
alias: change_date
owner: NodeCreation
domain_of:
- Change
range: string
contributor:
name: contributor
from_schema: https://w3id.org/kgcl
rank: 1000
slot_uri: dcterms:creator
alias: contributor
owner: NodeCreation
domain_of:
- Change
range: string
has_undo:
name: has_undo
description: A change that reverses this change
from_schema: https://w3id.org/kgcl
rank: 1000
domain: Change
alias: has_undo
owner: NodeCreation
domain_of:
- Change
- ChangeMixin
range: Deletion
multivalued: false
change_description:
name: change_description
description: A string serialization of the change. This should be both human-readable,
and parseable.
comments:
- '{''Form 1'': ''IRIs are denoted by CURIEs, optionally followed by label in
parenthesis''}'
- '{''Form 2'': "IRIs are denoted by the rdfs:label in single quotes, e.g. ''nervous
system''"}'
examples:
- value: rename UBERON:0002398 from 'manus' to 'hand'
- value: move 'hand' from 'part of' 'hindlimb' to 'part of' 'forelimb'
- value: merge 'cellular metabolic process' into 'metabolic process'
- value: search and replace 'metabolic process' with 'metabolism' in all labels
under 'biological process'
- value: search and replace 'metabolic process' with 'metabolism' in all labels
under 'biological process' retaining as 'exact synonym'
from_schema: https://w3id.org/kgcl
rank: 1000
string_serialization: creating node {id} {label} with {annotation set}
alias: change_description
owner: NodeCreation
domain_of:
- Change
range: string
associated_change_set:
name: associated_change_set
description: 'All changes forced as a result of this obsoletion. For example,
starting with `A subClassOf B subClassOf C`, if we obsolete node B, then we
may decide to bundle in a node move change of A from B to C. Note: this change
set is not considered a part of the obsoletion, as obsoletion is considered
atomic/simple. Instead this is a reference to a change set that may exist elsewhere'
from_schema: https://w3id.org/kgcl
rank: 1000
is_a: change_set
alias: associated_change_set
owner: NodeCreation
domain_of:
- Change
range: Change
multivalued: true
inlined: true
inlined_as_list: true
about:
name: about
description: The 'focus' entity on which the change operates
from_schema: https://w3id.org/kgcl
rank: 1000
alias: about
owner: NodeCreation
domain_of:
- ChangeMixin
range: OntologyElement
multivalued: false