Class: RemoveNodeFromSubset

Removes a node from a subset, by removing an annotation

classDiagram class RemoveNodeFromSubset click RemoveNodeFromSubset href "../RemoveNodeFromSubset" RemoveFromSubset <|-- RemoveNodeFromSubset click RemoveFromSubset href "../RemoveFromSubset" NodeChange <|-- RemoveNodeFromSubset click NodeChange href "../NodeChange" RemoveNodeFromSubset : about RemoveNodeFromSubset --> "0..1" OntologyElement : about click OntologyElement href "../OntologyElement" RemoveNodeFromSubset : about_node RemoveNodeFromSubset --> "0..1" Node : about_node click Node href "../Node" RemoveNodeFromSubset : about_node_representation RemoveNodeFromSubset : associated_change_set RemoveNodeFromSubset --> "*" Change : associated_change_set click Change href "../Change" RemoveNodeFromSubset : change_date RemoveNodeFromSubset : change_description RemoveNodeFromSubset : contributor RemoveNodeFromSubset : creator RemoveNodeFromSubset : has_undo RemoveNodeFromSubset --> "0..1" AddToSubset : has_undo click AddToSubset href "../AddToSubset" RemoveNodeFromSubset : id RemoveNodeFromSubset : in_subset RemoveNodeFromSubset --> "0..1" OntologySubset : in_subset click OntologySubset href "../OntologySubset" RemoveNodeFromSubset : language RemoveNodeFromSubset : new_datatype RemoveNodeFromSubset : new_language RemoveNodeFromSubset : new_value RemoveNodeFromSubset : new_value_type RemoveNodeFromSubset : old_datatype RemoveNodeFromSubset : old_language RemoveNodeFromSubset : old_value RemoveNodeFromSubset : old_value_type RemoveNodeFromSubset : pull_request RemoveNodeFromSubset : see_also RemoveNodeFromSubset : term_tracker_issue RemoveNodeFromSubset : type RemoveNodeFromSubset : was_generated_by RemoveNodeFromSubset --> "0..1" Activity : was_generated_by click Activity href "../Activity"

Inheritance

ChangeLanguageElement
- Change
  - SimpleChange
    - NodeChange
      - RemoveNodeFromSubset [ RemoveFromSubset]

Slots

Name	Cardinality and Range	Description	Inheritance
about_node	0..1 Node	The node that is removed from the subset	NodeChange
about_node_representation	0..1 String	The representation of a node (URI, CURIE, label)	NodeChange
language	0..1 LanguageTag	The language tag of a literal	NodeChange
old_value	0..1 String	The value of a property held in the old instance of the ontology	ChangeMixin, SimpleChange
new_value	0..1 String	The value of a property held in the new instance of the ontology	ChangeMixin, SimpleChange
old_value_type	0..1 String	The type (IRI or Literal) of an old value	SimpleChange
new_value_type	0..1 String	The type (IRI or Literal) of a new value	SimpleChange
new_language	0..1 String	The new language tag of a literal	SimpleChange
old_language	0..1 String	The old language tag of a literal	SimpleChange
new_datatype	0..1 String	The new datatype of a literal	SimpleChange
old_datatype	0..1 String	The old datatype of a literal	SimpleChange
id	1 String		Change
type	0..1 String		Change
was_generated_by	0..1 Activity		Change
see_also	0..1 String		Change
pull_request	0..1 String		Change
term_tracker_issue	0..1 String		Change
creator	0..1 String		Change
change_date	0..1 String		Change
contributor	0..1 String		Change
has_undo	0..1 AddToSubset	A change that reverses this change	ChangeMixin, Change
change_description	0..1 String	A string serialization of the change	Change
associated_change_set	* Change	All changes forced as a result of this obsoletion	Change
in_subset	0..1 OntologySubset	The subset from which the node is to be removed	SubsetMembershipChange
about	0..1 OntologyElement	The 'focus' entity on which the change operates	ChangeMixin

Aliases

remove term from slim

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/kgcl

Mappings

Mapping Type	Mapped Value
self	kgcl:RemoveNodeFromSubset
native	kgcl:RemoveNodeFromSubset

LinkML Source

Direct

name: RemoveNodeFromSubset
description: Removes a node from a subset, by removing an annotation
from_schema: https://w3id.org/kgcl
aliases:
- remove term from slim
is_a: NodeChange
mixins:
- RemoveFromSubset
slot_usage:
  change_description:
    name: change_description
    string_serialization: removing {about_node} from {subset}
  about_node:
    name: about_node
    description: The node that is removed from the subset
  in_subset:
    name: in_subset
    description: The subset from which the node is to be removed

Induced

name: RemoveNodeFromSubset
description: Removes a node from a subset, by removing an annotation
from_schema: https://w3id.org/kgcl
aliases:
- remove term from slim
is_a: NodeChange
mixins:
- RemoveFromSubset
slot_usage:
  change_description:
    name: change_description
    string_serialization: removing {about_node} from {subset}
  about_node:
    name: about_node
    description: The node that is removed from the subset
  in_subset:
    name: in_subset
    description: The subset from which the node is to be removed
attributes:
  about_node:
    name: about_node
    description: The node that is removed from the subset
    from_schema: https://w3id.org/kgcl
    rank: 1000
    is_a: about
    alias: about_node
    owner: RemoveNodeFromSubset
    domain_of:
    - NodeChange
    range: Node
    multivalued: false
  about_node_representation:
    name: about_node_representation
    description: 'The representation of a node (URI, CURIE, label) '
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: about_node_representation
    owner: RemoveNodeFromSubset
    domain_of:
    - NodeChange
    range: string
  language:
    name: language
    description: The language tag of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: language
    owner: RemoveNodeFromSubset
    domain_of:
    - EdgeChange
    - NodeChange
    - NewSynonym
    - NodeCreation
    range: LanguageTag
  old_value:
    name: old_value
    description: The value of a property held in the old instance of the ontology
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_value
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    - ChangeMixin
    - NodeRename
    - SetLanguageForName
    - RemoveSynonym
    - SynonymReplacement
    - SynonymPredicateChange
    - MappingReplacement
    - MappingPredicateChange
    - MetadataAssertionReplacement
    - MetadataAssertionPredicateChange
    - RemoveTextDefinition
    - TextDefinitionReplacement
    range: string
  new_value:
    name: new_value
    description: The value of a property held in the new instance of the ontology
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_value
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    - ChangeMixin
    - NodeRename
    - SetLanguageForName
    - NewSynonym
    - SynonymReplacement
    - SynonymPredicateChange
    - MappingReplacement
    - MappingPredicateChange
    - MetadataAssertionReplacement
    - MetadataAssertionPredicateChange
    - NewTextDefinition
    - TextDefinitionReplacement
    range: string
  old_value_type:
    name: old_value_type
    description: The type (IRI or Literal) of an old value
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_value_type
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    range: string
  new_value_type:
    name: new_value_type
    description: The type (IRI or Literal) of a new value
    deprecated: no longer required
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_value_type
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    range: string
  new_language:
    name: new_language
    description: The new language tag of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_language
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    - NodeRename
    range: string
  old_language:
    name: old_language
    description: The old language tag of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_language
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    - NodeRename
    range: string
  new_datatype:
    name: new_datatype
    description: The new datatype of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: new_datatype
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    range: string
  old_datatype:
    name: old_datatype
    description: The old datatype of a literal
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: old_datatype
    owner: RemoveNodeFromSubset
    domain_of:
    - SimpleChange
    range: string
  id:
    name: id
    from_schema: https://w3id.org/kgcl
    rank: 1000
    identifier: true
    alias: id
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    - Node
    - Activity
    - Agent
    range: string
    required: true
  type:
    name: type
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: rdf:type
    designates_type: true
    alias: type
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  was_generated_by:
    name: was_generated_by
    comments:
    - we use the PROV model to represent the agent making a change
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: prov:wasGeneratedBy
    alias: was_generated_by
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: Activity
  see_also:
    name: see_also
    comments:
    - If this change is in relationship to an issue on a system like github, include
      the URL here
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: rdfs:seeAlso
    alias: see_also
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  pull_request:
    name: pull_request
    comments:
    - If this change has a pull request on a system like github, include the URL here
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: pull_request
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  term_tracker_issue:
    name: term_tracker_issue
    comments:
    - If this change has an issue on a system like github, include the URL here
    from_schema: https://w3id.org/kgcl
    exact_mappings:
    - IAO:0000233
    rank: 1000
    alias: term_tracker_issue
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  creator:
    name: creator
    comments:
    - This should be the composition of 'was generated by' and 'was associated with'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:creator
    alias: creator
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  change_date:
    name: change_date
    comments:
    - This should be the composition of 'was generated by' and 'ended at time'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:date
    alias: change_date
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  contributor:
    name: contributor
    from_schema: https://w3id.org/kgcl
    rank: 1000
    slot_uri: dcterms:creator
    alias: contributor
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  has_undo:
    name: has_undo
    description: A change that reverses this change
    from_schema: https://w3id.org/kgcl
    rank: 1000
    domain: Change
    alias: has_undo
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    - ChangeMixin
    range: AddToSubset
    multivalued: false
  change_description:
    name: change_description
    description: A string serialization of the change. This should be both human-readable,
      and parseable.
    comments:
    - '{''Form 1'': ''IRIs are denoted by CURIEs, optionally followed by label in
      parenthesis''}'
    - '{''Form 2'': "IRIs are denoted by the rdfs:label in single quotes, e.g. ''nervous
      system''"}'
    examples:
    - value: rename UBERON:0002398 from 'manus' to 'hand'
    - value: move 'hand' from 'part of' 'hindlimb' to 'part of' 'forelimb'
    - value: merge 'cellular metabolic process' into 'metabolic process'
    - value: search and replace 'metabolic process' with 'metabolism' in all labels
        under 'biological process'
    - value: search and replace 'metabolic process' with 'metabolism' in all labels
        under 'biological process' retaining as 'exact synonym'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    string_serialization: removing {about_node} from {subset}
    alias: change_description
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: string
  associated_change_set:
    name: associated_change_set
    description: 'All changes forced as a result of this obsoletion. For example,
      starting with `A subClassOf B subClassOf C`, if we obsolete node B, then we
      may decide to bundle in a node move change of A from B to C. Note: this change
      set is not considered a part of the obsoletion, as obsoletion is considered
      atomic/simple. Instead this is a reference to a change set that may exist elsewhere'
    from_schema: https://w3id.org/kgcl
    rank: 1000
    is_a: change_set
    alias: associated_change_set
    owner: RemoveNodeFromSubset
    domain_of:
    - Change
    range: Change
    multivalued: true
    inlined: true
    inlined_as_list: true
  in_subset:
    name: in_subset
    description: The subset from which the node is to be removed
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: in_subset
    owner: RemoveNodeFromSubset
    domain_of:
    - SubsetMembershipChange
    range: OntologySubset
  about:
    name: about
    description: The 'focus' entity on which the change operates
    from_schema: https://w3id.org/kgcl
    rank: 1000
    alias: about
    owner: RemoveNodeFromSubset
    domain_of:
    - ChangeMixin
    range: OntologyElement
    multivalued: false