Package org.incenp.obofoundry.odk

Class ValidateCommand

java.lang.Object

org.incenp.obofoundry.odk.BasePlugin

org.incenp.obofoundry.odk.ValidateCommand

All Implemented Interfaces:

org.obolibrary.robot.Command

public class ValidateCommand
extends BasePlugin

A command to check the alignment of an ontology against another, upper-level ontology. The ontology is said to be “aligned” if all its classes are subclasses of one of the upper ontology’s classes.

Field Summary

Fields inherited from class org.incenp.obofoundry.odk.BasePlugin

ioHelper, options

Fields inherited from interface org.obolibrary.robot.Command

global, missingFileError

Constructor Summary

Constructors

Constructor	Description
ValidateCommand()

Method Summary

Modifier and Type	Method	Description
void	performOperation(org.obolibrary.robot.CommandState state, org.apache.commons.cli.CommandLine line)	Performs whatever operation the command is supposed to do.

Methods inherited from class org.incenp.obofoundry.odk.BasePlugin

execute, getDescription, getIRI, getName, getOptions, getUsage, main, readFile, readFileAsIRIs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ValidateCommand

public ValidateCommand()

Method Details

performOperation

public void performOperation(org.obolibrary.robot.CommandState state,
 org.apache.commons.cli.CommandLine line)
                      throws Exception

Description copied from class: BasePlugin

Performs whatever operation the command is supposed to do.

Specified by:

performOperation in class BasePlugin

Parameters:

state - The internal state of ROBOT.

line - The command line used to invoke the command.

Throws:

Exception - If any error occurs when attempting to execute the operation.