oaklib

Contents:

  • Introduction
  • Tutorial
  • The OAK Guide
  • Architecture
  • Interfaces
  • Implementations
    • Pronto / OBO Files Implementation
    • SQL Database Implementation
    • Ontology Lookup Service (OLS) Endpoint
    • Simple OBO Implementation
    • OBO Graph Implementation
    • Bioportal Endpoint
    • Sparql Endpoint
    • Ubergraph Endpoint
    • Ontobee Endpoint
    • Ontology Lookup Service (OLS) Endpoint
    • Gilda Endpoint
    • Aggregator Implementation
  • Command Line
  • Ontology Implementation Selectors
  • Datamodels
  • Converters
  • Utilities
  • How-To Guides
  • Notebooks
  • Ontology Concepts
  • Glossary
  • Frequently Asked Questions
oaklib
  • Implementations
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Implementations

Implementations implement one or more Interfaces

The most mature implementations are:

  • Ubergraph: wraps the public ubergraph endpoint

  • Pronto: uses the pronto lib (which itself uses fastobo) to load local obo, rdf/xml owl, or obojson files

  • Sql: see semantic-sql

Contents:

  • Pronto / OBO Files Implementation
    • About
    • Initialization
    • Code
  • SQL Database Implementation
    • Initialization
    • Code
    • SQL Alchemy ORM Model
  • Ontology Lookup Service (OLS) Endpoint
    • Code
  • Simple OBO Implementation
    • About
    • Initialization
    • Code
  • OBO Graph Implementation
    • About
    • Initialization
    • Code
  • Bioportal Endpoint
    • API Keys
    • Command Line Examples
      • Search
      • Mappings
    • Code
  • Sparql Endpoint
    • Code
  • Ubergraph Endpoint
    • About
    • Interfaces Implemented
      • Connecting
      • Search
    • Code
  • Ontobee Endpoint
    • Initialization
    • Code
  • Ontology Lookup Service (OLS) Endpoint
    • Code
  • Gilda Endpoint
    • Command Line Examples
      • Annotation
    • Code
  • Aggregator Implementation
    • Command Line Usage
    • Code
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