Implementations

Implementations implement one or more Interfaces

The most mature implementations are:

• Ubergraph: wraps the public ubergraph endpoint

• Pronto: uses the pronto lib (which itself uses fastobo) to load local obo, rdf/xml owl, or obojson files

• Sql: see semantic-sql

Warning

Currently numerous methods are not implemented!

Contents:

• Pronto / OBO Files Implementation
  • About
  • Initialization
  • Code
• SQL Database Implementation
  • Iniialization
  • Code
  • SQL Alchemy ORM Model
• Ontology Lookup Service (OLS) Endpoint
  • Code
• Bioportal Endpoint
  • API Keys
  • Command Line Examples
    • Search
    • Mappings
  • Code
• Sparql Endpoint
  • Code
• Ubergraph Endpoint
  • About
  • Interfaces Implemented
  • Code
• Ontobee Endpoint
  • Initialization
  • Code
• Ontology Lookup Service (OLS) Endpoint
  • Code
• Gilda Endpoint
  • Command Line Examples
    • Annotation
  • Code
• Aggregator Implementation
  • Command Line Usage
  • Code