Patcher Interface
Warning
this interface is still highly incomplete. In future it will allow any operation from KGCL to be applied
- class oaklib.interfaces.patcher_interface.PatcherInterface(resource: typing.Optional[oaklib.resource.OntologyResource] = None, strict: bool = False, multilingual: typing.Optional[bool] = None, preferred_language: str = <factory>, autosave: bool = <factory>, exclude_owl_top_and_bottom: bool = <factory>, ontology_metamodel_mapper: typing.Optional[oaklib.mappers.ontology_metadata_mapper.OntologyMetadataMapper] = None, _converter: typing.Optional[curies.api.Converter] = None, auto_relax_axioms: typing.Optional[bool] = None)[source]
Applies diffs
See KGCL
- apply_patch(patch: kgcl_schema.datamodel.kgcl.Change, activity: Optional[kgcl_schema.datamodel.kgcl.Activity] = None, metadata: Optional[Mapping[str, Any]] = None, configuration: Optional[kgcl_schema.datamodel.kgcl.Configuration] = None) Optional[kgcl_schema.datamodel.kgcl.Change] [source]
Applies a change description
- Parameters
patch – TBD use KGCL
activity –
metadata –
configuration –
- Returns
if successful, return copy of change object with additional metadata attached
- auto_add_contributor_using: str = None
If provided, then any creators of or contributors on a Change object are propagated to the entity after application of that change, using this property. If this is set then the recommended value is dct:contributor
- expand_change(change: kgcl_schema.datamodel.kgcl.Change, configuration: Optional[kgcl_schema.datamodel.kgcl.Configuration] = None) List[kgcl_schema.datamodel.kgcl.Change] [source]
Expand a complex change object to a list of atomic changes.
Examples:
An obsoletion command may also generate a label change and removal or rewiring of edges
A NameBecomesSynonym may generate a NewSynonym and a NodeRename
- Parameters
change –
configuration –
- Returns
- expand_changes(changes: List[kgcl_schema.datamodel.kgcl.Change], configuration: Optional[kgcl_schema.datamodel.kgcl.Configuration] = None, apply=False) List[kgcl_schema.datamodel.kgcl.Change] [source]
Expand a list of complex change objects to a list of atomic changes.
- Parameters
changes –
configuration –
apply – if True, apply the changes
- Returns
- migrate_curies(curie_map: Dict[str, str]) None [source]
Rewire an ontology replacing all usages of some CURIEs
- Parameters
curie_map –
- Returns