Class: Problem

Represents an instance of a problem pertaining to conformance to OBO guidelines

  • NOTE: this is an abstract class and should not be instantiated directly

URI: semsql_obo:Problem

classDiagram Problem <|-- LexicalProblem Problem <|-- TrailingWhitespaceProblem Problem <|-- PropertyUsedWithDatatypeValuesAndObjects Problem <|-- NodeWithTwoLabelsProblem Problem <|-- AllProblems Problem : predicate Problem : subject Problem : value

Usage

SELECT * FROM problem;

Inheritance

Slots

Name Cardinality and Range Description
subject 0..1
Node		 The thing that is problematic
predicate 0..1
PropertyNode		 The property of the thing that is problematic
value 0..1
LiteralAsStringType		 Note the range of this slot is always a string

Usages

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/semsql/obo

Mappings

Mapping Type Mapped Value
self ['semsql_obo:Problem']
native ['semsql_obo:Problem']

LinkML Specification

Direct

name: problem
description: Represents an instance of a problem pertaining to conformance to OBO
  guidelines
from_schema: https://w3id.org/semsql/obo
rank: 1000
abstract: true
slots:
- subject
- predicate
- value
slot_usage:
  subject:
    name: subject
    description: The thing that is problematic
    domain_of:
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - owl_equivalent_to_intersection_member
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - repair_action
    - problem
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - owl_equivalent_to_intersection_member
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - repair_action
    - problem
  predicate:
    name: predicate
    description: The property of the thing that is problematic
    domain_of:
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - problem
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - problem

Induced

name: problem
description: Represents an instance of a problem pertaining to conformance to OBO
  guidelines
from_schema: https://w3id.org/semsql/obo
rank: 1000
abstract: true
slot_usage:
  subject:
    name: subject
    description: The thing that is problematic
    domain_of:
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - owl_equivalent_to_intersection_member
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - repair_action
    - problem
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - owl_equivalent_to_intersection_member
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - repair_action
    - problem
  predicate:
    name: predicate
    description: The property of the thing that is problematic
    domain_of:
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - problem
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - problem
attributes:
  subject:
    name: subject
    description: The thing that is problematic
    from_schema: https://w3id.org/semsql/rdf
    rank: 1000
    slot_uri: rdf:subject
    alias: subject
    owner: problem
    domain_of:
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - owl_equivalent_to_intersection_member
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - repair_action
    - problem
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - owl_equivalent_to_intersection_member
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - repair_action
    - problem
    range: node
  predicate:
    name: predicate
    description: The property of the thing that is problematic
    from_schema: https://w3id.org/semsql/rdf
    rank: 1000
    slot_uri: rdf:predicate
    alias: predicate
    owner: problem
    domain_of:
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - problem
    - term_association
    - owl_complex_axiom
    - owl_subclass_of_some_values_from
    - statements
    - relation_graph_construct
    - edge
    - subgraph_query
    - subgraph_edge_by_ancestor
    - subgraph_edge_by_descendant
    - subgraph_edge_by_parent
    - subgraph_edge_by_child
    - subgraph_edge_by_self
    - entailed_edge
    - entailed_edge_cycle
    - transitive_edge
    - problem
    range: property_node
  value:
    name: value
    description: Note the range of this slot is always a string. Only used the triple
      represents a literal assertion
    from_schema: https://w3id.org/semsql/rdf
    close_mappings:
    - rdf:object
    rank: 1000
    slot_uri: rdf:object
    alias: value
    owner: problem
    domain_of:
    - statements
    - problem
    range: literal as string type