oaklib

Contents:

  • Introduction
  • Tutorial
  • The OAK Guide
  • Architecture
  • Interfaces
  • Implementations
  • Command Line
  • Ontology Implementation Selectors
  • Datamodels
  • Converters
  • Utilities
  • How-To Guides
    • How to Validate an OBO ontology using Obo Metadata Ontology schema
    • How to write a plugin
  • Notebooks
  • Ontology Concepts
  • Glossary
  • Frequently Asked Questions
oaklib
  • How-To Guides
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How-To Guides

Warning

many of these guides are in-progress

Contents:

  • How to Validate an OBO ontology using Obo Metadata Ontology schema
    • Steps
      • Step 1: Obtain the sqlite version of the ontology
      • Step 2: Install oaklib
      • Step 3: Validate an individual ontology
      • Step 3 (alternative): Validate multiple ontologies
    • Caveats
    • Using your own schema
    • How this works
    • Analysis
  • How to write a plugin
    • What is a plugin?
    • An example plugin
    • Creating a plugin
      • Discuss on the issue tracker
      • Create a new project
      • Implement one or more interfaces
      • Implement a selector
      • Write tests
    • Release to PyPI
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