oaklib
Contents:
Introduction
Tutorial
The OAK Guide
OAK Library Documentation
Command Line
Datamodels
How-To Guides
How to Validate an OBO ontology using Obo Metadata Ontology schema
How to write a plugin
FHIR Conversions
Jupyter Notebooks
Glossary
FAQ
oaklib
How-To Guides
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How-To Guides
Warning
many of these guides are in-progress
Contents:
How to Validate an OBO ontology using Obo Metadata Ontology schema
Steps
Step 1: Obtain the sqlite version of the ontology
Step 2: Install oaklib
Step 3: Validate an individual ontology
Step 3 (alternative): Validate multiple ontologies
Caveats
Using your own schema
How this works
Analysis
How to write a plugin
What is a plugin?
An example plugin
Creating a plugin
Discuss on the issue tracker
Create a new project
Implement one or more interfaces
Implement a selector
Write tests
Release to PyPI
FHIR Conversions
CLI
Config file