Examples

All the examples here are Jupyter notebooks that can be run interactively.

• Commands
  • OAK apply command
  • OAK associations command
  • command: crawl
  • OAK diff-via-mappings command
  • OAK disjoints command
  • OAK enrichment command
  • OAK logical-definitions command
  • OAK mappings command
  • OAK obsoletes command
  • OAK paths command
  • OAK relationships command
  • OAK rollup command
  • OAK statistics command
  • OAK taxon-constraints command
  • OAK termset-similarity command
  • OAK validate-definitions command
  • OAK validate-mappings command
• Ontologies
  • CHEBI Examples
  • CL Examples
  • ENVO Examples
  • GO Examples
  • HP Examples
  • LOINC Examples
  • MAXO Examples
  • MONDO Examples
  • NCIT Examples
  • OBA Examples
  • OMOP Examples
  • PhenIO Examples
  • Schema.org Examples
• Adapter Examples
  • Ubergraph Tutorial
  • LLM Tutorial
• Interfaces Examples
  • Basic Ontology Interface Demo
  • Graph Operations
  • ClassEnrichmentCalculationInterface Examples
  • MappingProviderInterface Examples
  • Import libraries
  • Declare variables
  • Functions
  • Bioportal => SSSOM
  • Local Ontology => SSSOM
  • Get mappings using lexmatch
• Ad Hoc Examples
  • Summarizing with LLMs
  • Analyzing Text Content of all Ontologies
  • Value Set Expansion examples