oaklib

Contents:

  • Introduction
  • Tutorial
  • The OAK Guide
  • OAK Library Documentation
  • Command Line
  • Datamodels
  • How-To Guides
  • Jupyter Notebooks
  • Glossary
  • FAQ
oaklib
  • Ontology Access Kit (OAK) Documentation
  • View page source

Ontology Access Kit (OAK) Documentation

Contents:

  • Introduction
    • Basic Python Example
    • Basic Command Line Example
  • Tutorial
    • Part 1: Getting Started
    • Part 2: Basic Python
    • Part 3: Triplestore Backends
    • Part 4: OboGraphs
    • Part 5: Graph Visualization
    • Part 6: Working With OWL
    • Part 7: SQLite files
    • Part 8: Applying Changes to Ontologies
  • The OAK Guide
    • OAK Basics
    • Identifying entities: CURIEs and URIs
    • Primary Labels
    • Aliases and Synonyms
    • Mappings and Cross-References
    • Obsoletion
    • Relationships and Graphs
    • Associations and Curated Annotations
    • Learning More
  • OAK Library Documentation
    • Architecture
    • Interfaces
    • Implementations
    • Ontology Adapter Selectors
    • Converters
    • Utilities
  • Command Line
    • General Guidelines
    • Common Patterns
    • Commands
  • Datamodels
    • Ontology Metadata Ontology Schema
    • search datamodel
    • Obographs Datamodel
    • SSSOM
    • FunOwl
    • KGCL
    • Semantic Similarity
    • Summary Statistics Datamodel
    • Taxon Constraints Reporting Datamodel
    • Validation Results Datamodel
    • Lexical Index
    • Mapping Rules Datamodel
    • Text Annotator Datamodel
    • Cross-Ontology Diff
    • OAK Association Data Model
  • How-To Guides
    • How to Validate an OBO ontology using Obo Metadata Ontology schema
    • How to write a plugin
    • FHIR Conversions
  • Jupyter Notebooks
  • Glossary
  • FAQ
    • FAQ: General
    • FAQ: Ontologies
    • FAQ: Architecture and Design
    • FAQ: Contributing
    • FAQ: Troubleshooting

Indices and tables

  • Index

  • Module Index

  • Search

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