Converters
OAK uses a number of different Data Models (See Datamodels) for representing ontologies and ontology-related information.
Command Line Usage
The general pattern is:
$ runoak -i INPUT-SPEC dump -O FORMAT -o OUTPUT-FILE
Converting from Obo Graphs
Currently the only converters implemented are for converting between the OboGraphs data model and other models.
>>> from oaklib.utilities.obograph_utils import load_obograph_document
>>> graph_doc = load_obograph_document("tests/input/go-nucleus.json")