oaklib

Contents:

  • Introduction
  • Tutorial
  • The OAK Guide
  • OAK Library Documentation
    • Architecture
    • Interfaces
    • Implementations
      • Pronto / OBO Files Adapter
      • SQL Database Adapter
      • Ontology Lookup Service (OLS) Adapter
      • Simple OBO Adapter
      • OBO Graph Adapter
      • Bioportal Adapter
      • Sparql Adapter
      • Ubergraph Adapter
      • Ontobee Adapter
      • Ontology Lookup Service (OLS) Adapter
      • Gilda Adapter
      • Aggregator Adapter
      • PantherDB Adapter
      • ROBOT Template Adapter
      • Translator Adapter
      • LLM Adapter
    • Ontology Adapter Selectors
    • Converters
    • Utilities
  • Command Line
  • Datamodels
  • How-To Guides
  • Examples
  • Glossary
  • FAQ
oaklib
  • OAK Library Documentation
  • Implementations
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Implementations

Implementations (also known as adapters) implement one or more Interfaces

Contents:

  • Pronto / OBO Files Adapter
    • About
    • Initialization
    • Code
      • ProntoImplementation
  • SQL Database Adapter
    • Initialization
    • Code
      • SqlImplementation
    • SQL Alchemy ORM Model
      • Statements
      • Edge
      • EntailedEdge
  • Ontology Lookup Service (OLS) Adapter
    • Code
      • OlsImplementation
  • Simple OBO Adapter
    • About
    • Initialization
    • Code
      • SimpleOboImplementation
  • OBO Graph Adapter
    • About
    • Initialization
    • Code
      • OboGraphImplementation
  • Bioportal Adapter
    • API Keys
    • Command Line Examples
      • Search
      • Mappings
    • Code
  • Sparql Adapter
    • Code
      • SparqlImplementation
  • Ubergraph Adapter
    • About
    • Interfaces Implemented
      • Connecting
      • Search
    • Code
      • UbergraphImplementation
      • RelationGraphEnum
  • Ontobee Adapter
    • Documentation
      • OntobeeImplementation
  • Ontology Lookup Service (OLS) Adapter
    • Code
      • OlsImplementation
  • Gilda Adapter
    • Command Line Examples
      • Annotation
    • Code
      • GildaImplementation
  • Aggregator Adapter
    • Documentation
      • AggregatorImplementation
  • PantherDB Adapter
    • Command Line Examples
      • Annotation
      • Enrichment
      • Mapping
    • Code
      • PantherDBImplementation
  • ROBOT Template Adapter
    • Command Line Examples
      • Basic operations
      • Applying KGCL commands
  • Translator Adapter
    • About
      • Command Line
    • Code
      • TranslatorImplementation
  • LLM Adapter
    • Command Line Examples
      • Annotation
      • Validation of Mappings
    • Code
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