OAK Library Documentation

Contents:

• Architecture
  • Ontology Interfaces
  • Implementations
  • Other Interfaces
  • Partial and Complete Implementation
• Interfaces
  • Basic Ontology Interface
  • Search Interface
  • Subsetting
  • Validator Interface
  • Relation Graph
  • Mapping Provider Interface
  • OboGraph Interface
  • Text Annotator Interface
  • Summary Statistics
  • Differ Interface
  • Patcher Interface
  • Semantic Similarity Interface
  • Association Provider Interface
  • Class Enrichment Calculation Interface
  • Dumper Interface
  • OWL Interface
  • Aggregator Interface
• Implementations
  • Pronto / OBO Files Adapter
  • SQL Database Adapter
  • Ontology Lookup Service (OLS) Adapter
  • Simple OBO Adapter
  • OBO Graph Adapter
  • Bioportal Adapter
  • Sparql Adapter
  • Ubergraph Adapter
  • Ontobee Adapter
  • Ontology Lookup Service (OLS) Adapter
  • Gilda Adapter
  • Aggregator Adapter
  • PantherDB Adapter
  • ROBOT Template Adapter
  • Translator Adapter
  • LLM Adapter
• Ontology Adapter Selectors
  • Syntax
  • Examples
  • Schemes
  • Functions
• Converters
  • Command Line Usage
  • Converting from Obo Graphs
• Utilities
  • oaklib.utilities.obograph_utils
  • oaklib.utilities.graph.relationship_walker
  • oaklib.utilities.graph.networkx_bridge
  • oaklib.utilities.lexical.lexical_indexer
  • oaklib.utilities.subsets.slimmer_utils
  • oaklib.utilities.apikey_manager
  • oaklib.utilities.taxon.taxon_constraint_utils
  • oaklib.utilities.table_filler