oaklib.utilities.lexical.lexical_indexer

Lexical Utilities

Various utilities for working with lexical aspects of ontologies plus mappings

Functions

add_labels_from_uris(oi)	Adds a label based on the CURIE or URI for entities that lack labels
apply_transformation(term, transformation)	Apply an individual transformation on a term
create_lexical_index(oi[, pipelines, ...])	Generates a LexicalIndex keyed by normalized terms
create_mapping(term, r1, r2[, pred, confidence])	Create mappings between a pair of entities.
create_or_load_lexical_index(path, oi, **kwargs)	Creates a lexical index and saves it to the specified path if it does not exist.
inferred_mapping(oi, term, r1, r2[, ruleset])	Create a mapping from a pair of relationships, applying rules to filter or assign confidence
inverse_logit(weight)	Inverse logit
invert_mapping_predicate(pred)	Return the opposite of predicate passed.
lexical_index_to_sssom(oi, lexical_index[, ...])	Transform a lexical index to an SSSOM MappingSetDataFrame by finding all pairs for any given index term.
load_lexical_index(path[, syntax])	Loads from a YAML file
load_mapping_rules(path)	Loads from a YAML file that contains rules for mapping.
precondition_holds(precondition, mapping)
save_lexical_index(lexical_index, path[, syntax])	Saves a YAML using standard mapping of datanodel to YAML
save_mapping_rules(mapping_rules, path)	Saves a YAML using standard mapping of datanodel to YAML