PantherDB Adapter

Command Line Examples

Use the pantherdb selector, with an optional NCBI Taxon local ID.

Annotation

runoak -i pantherdb:9606 associations -Q subject UniProtKB:P04217 --no-autolabel

Enrichment

runoak -i pantherdb:9606 enrichment -U my-gene-ids.txt

Mapping

runoak -i pantherdb:9606 mappings UniProtKB:P04217

Code