Taxon Constraints Reporting Datamodel

A datamodel for representing inferred and asserted taxon constraints.

URI: https://w3id.org/oak/taxon_constraints

Name: taxon-constraints

Classes

Class	Description
TaxonConstraint	An individual taxon constraint
Term	An ontology term. In this model this is either the SubjectTerm of a taxon constraint, or an actual taxon
PredicateTerm	A term that represents a relationship type
SubjectTerm	A term that is the subject of a taxon constraint. Typically comes from ontologies like GO, UBERON, CL, …
Taxon	A term that represents a taxonomic group, may be at species level of a higher level

Slot	Description
asserted	holds if the constraint is asserted in the source ontology, rather than infer…
candidate	true if this is a proposed candidate constraint
comments
contradicted_by	If the taxon constraint conflicts with another, then this is the set of taxo…
description	A description of the term
evolutionary	holds if the constraint is an evolutionary statement
id	the OBO CURIE for the term
label	the human readable name or label of the term
never_in	Points to a taxon constraint that states the SubjectTerm is NEVER found in a …
only_in	Points to a taxon constraint that states the SubjectTerm is ONLY found in a t…
predicate	The relationship type for the constraint (e
predicates	The predicates that connect the subject term to the via_terms
present_in	The term MAY be in the specified taxon, or a descendant of that taxon
present_in_ancestor_of
redundant	True if this is redundant within the set of constraints of the same type (nev…
redundant_with	If the taxon constraint is redundant, then this is the set of taxon constrain…
redundant_with_only_in	True for never in constraints that are subsumed by an only in
sources
subject	The term to which the constraint applies
taxon	The taxon which this constraint is about
unsatisfiable	If true then some combination of taxon constraints plus ontology lead to cont…
via_terms	For inferred taxon constraints, this is the term or terms that have the taxon…

Enumeration	Description
ConfigurationOption

Type	Description
Boolean	A binary (true or false) value
Curie	a compact URI
Date	a date (year, month and day) in an idealized calendar
DateOrDatetime	Either a date or a datetime
Datetime	The combination of a date and time
Decimal	A real number with arbitrary precision that conforms to the xsd:decimal speci…
Double	A real number that conforms to the xsd:double specification
Float	A real number that conforms to the xsd:float specification
Integer	An integer
Jsonpath	A string encoding a JSON Path
Jsonpointer	A string encoding a JSON Pointer
Ncname	Prefix part of CURIE
Nodeidentifier	A URI, CURIE or BNODE that represents a node in a model
Objectidentifier	A URI or CURIE that represents an object in the model
Sparqlpath	A string encoding a SPARQL Property Path
String	A character string
Time	A time object represents a (local) time of day, independent of any particular…
Uri	a complete URI
Uriorcurie	a URI or a CURIE

Subset	Description