Taxon Constraints Reporting Datamodel

A datamodel for representing inferred and asserted taxon constraints.

URI: https://w3id.org/oak/taxon_constraints

Name: taxon-constraints

Classes

Class

Description

TaxonConstraint

An individual taxon constraint

Term

An ontology term. In this model this is either the SubjectTerm of a taxon constraint, or an actual taxon

        PredicateTerm

A term that represents a relationship type

        SubjectTerm

A term that is the subject of a taxon constraint. Typically comes from ontologies like GO, UBERON, CL, …

        Taxon

A term that represents a taxonomic group, may be at species level of a higher level

Slots

Slot

Description

asserted

holds if the constraint is asserted in the source ontology, rather than infer…

candidate

true if this is a proposed candidate constraint

comments

contradicted_by

If the taxon constraint conflicts with another, then this is the set of taxo…

description

A description of the term

evolutionary

holds if the constraint is an evolutionary statement

id

the OBO CURIE for the term

label

the human readable name or label of the term

never_in

Points to a taxon constraint that states the SubjectTerm is NEVER found in a …

only_in

Points to a taxon constraint that states the SubjectTerm is ONLY found in a t…

predicate

The relationship type for the constraint (e

predicates

The predicates that connect the subject term to the via_terms

present_in

The term MAY be in the specified taxon, or a descendant of that taxon

present_in_ancestor_of

redundant

True if this is redundant within the set of constraints of the same type (nev…

redundant_with

If the taxon constraint is redundant, then this is the set of taxon constrain…

redundant_with_only_in

True for never in constraints that are subsumed by an only in

sources

subject

The term to which the constraint applies

taxon

The taxon which this constraint is about

unsatisfiable

If true then some combination of taxon constraints plus ontology lead to cont…

via_terms

For inferred taxon constraints, this is the term or terms that have the taxon…

Enumerations

Enumeration

Description

ConfigurationOption

Types

Type

Description

Boolean

A binary (true or false) value

Curie

a compact URI

Date

a date (year, month and day) in an idealized calendar

DateOrDatetime

Either a date or a datetime

Datetime

The combination of a date and time

Decimal

A real number with arbitrary precision that conforms to the xsd:decimal speci…

Double

A real number that conforms to the xsd:double specification

Float

A real number that conforms to the xsd:float specification

Integer

An integer

Jsonpath

A string encoding a JSON Path

Jsonpointer

A string encoding a JSON Pointer

Ncname

Prefix part of CURIE

Nodeidentifier

A URI, CURIE or BNODE that represents a node in a model

Objectidentifier

A URI or CURIE that represents an object in the model

Sparqlpath

A string encoding a SPARQL Property Path

String

A character string

Time

A time object represents a (local) time of day, independent of any particular…

Uri

a complete URI

Uriorcurie

a URI or a CURIE

Subsets

Subset

Description