Class: TaxonConstraint

An individual taxon constraint

URI: rdf:Statement

classDiagram class TaxonConstraint click TaxonConstraint href "../TaxonConstraint" TaxonConstraint : asserted TaxonConstraint : candidate TaxonConstraint : comments TaxonConstraint : contradicted_by TaxonConstraint --> "*" TaxonConstraint : contradicted_by click TaxonConstraint href "../TaxonConstraint" TaxonConstraint : evolutionary TaxonConstraint : predicate TaxonConstraint --> "0..1" PredicateTerm : predicate click PredicateTerm href "../PredicateTerm" TaxonConstraint : predicates TaxonConstraint --> "*" PredicateTerm : predicates click PredicateTerm href "../PredicateTerm" TaxonConstraint : redundant TaxonConstraint : redundant_with TaxonConstraint --> "*" TaxonConstraint : redundant_with click TaxonConstraint href "../TaxonConstraint" TaxonConstraint : redundant_with_only_in TaxonConstraint : sources TaxonConstraint : subject TaxonConstraint --> "0..1" SubjectTerm : subject click SubjectTerm href "../SubjectTerm" TaxonConstraint : taxon TaxonConstraint --> "0..1" Taxon : taxon click Taxon href "../Taxon" TaxonConstraint : via_terms TaxonConstraint --> "*" SubjectTerm : via_terms click SubjectTerm href "../SubjectTerm"

Slots

Name

Cardinality and Range

Description

Inheritance

subject

0..1
SubjectTerm

The term to which the constraint applies

direct

predicate

0..1
PredicateTerm

The relationship type for the constraint (e

direct

asserted

0..1
Boolean

holds if the constraint is asserted in the source ontology, rather than infer…

direct

evolutionary

0..1
Boolean

holds if the constraint is an evolutionary statement

direct

redundant

0..1
Boolean

True if this is redundant within the set of constraints of the same type (nev…

direct

redundant_with_only_in

0..1
Boolean

True for never in constraints that are subsumed by an only in

direct

taxon

0..1
Taxon

The taxon which this constraint is about

direct

redundant_with

*
TaxonConstraint

If the taxon constraint is redundant, then this is the set of taxon constrain…

direct

contradicted_by

*
TaxonConstraint

If the taxon constraint conflicts with another, then this is the set of taxo…

direct

via_terms

*
SubjectTerm

For inferred taxon constraints, this is the term or terms that have the taxon…

direct

predicates

*
PredicateTerm

The predicates that connect the subject term to the via_terms

direct

sources

*
Uriorcurie

direct

comments

*
String

direct

candidate

0..1
Boolean

true if this is a proposed candidate constraint

direct

Usages

used by

used in

type

used

SubjectTerm

only_in

range

TaxonConstraint

SubjectTerm

never_in

range

TaxonConstraint

SubjectTerm

present_in

range

TaxonConstraint

SubjectTerm

present_in_ancestor_of

range

TaxonConstraint

TaxonConstraint

redundant_with

range

TaxonConstraint

TaxonConstraint

contradicted_by

range

TaxonConstraint

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/oak/taxon_constraints

Mappings

Mapping Type

Mapped Value

self

rdf:Statement

native

tc:TaxonConstraint

LinkML Source

Direct

```yaml name: TaxonConstraint description: An individual taxon constraint from_schema: https://w3id.org/oak/taxon_constraints attributes: subject: name: subject description: The term to which the constraint applies comments: - this is a reciprocal slot and will be the same as the containing SubjectTerm from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 slot_uri: rdf:subject domain_of: - TaxonConstraint range: SubjectTerm predicate: name: predicate description: The relationship type for the constraint (e.g. in_taxon, never_in taxon) todos: - define a value set of this from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 slot_uri: rdf:predicate domain_of: - TaxonConstraint range: PredicateTerm asserted: name: asserted description: holds if the constraint is asserted in the source ontology, rather than inferred by rules or reasoning from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: boolean evolutionary: name: evolutionary description: holds if the constraint is an evolutionary statement from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: boolean redundant: name: redundant description: True if this is redundant within the set of constraints of the same type (never vs only) from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: boolean redundant_with_only_in: name: redundant_with_only_in description: True for never in constraints that are subsumed by an only in from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: boolean taxon: name: taxon description: The taxon which this constraint is about. May be species or a more general class. from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 slot_uri: rdf:object domain_of: - TaxonConstraint range: Taxon inlined: true redundant_with: name: redundant_with description: If the taxon constraint is redundant, then this is the set of taxon constraints that it is redundant with from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: TaxonConstraint multivalued: true contradicted_by: name: contradicted_by description: If the taxon constraint conflicts with another, then this is the set of taxon constraints that it is redundant with from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: TaxonConstraint multivalued: true via_terms: name: via_terms description: For inferred taxon constraints, this is the term or terms that have the taxon constraint asserted from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: SubjectTerm multivalued: true inlined: true inlined_as_list: true predicates: name: predicates description: The predicates that connect the subject term to the via_terms. from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: PredicateTerm multivalued: true sources: name: sources from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: uriorcurie multivalued: true comments: name: comments from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: string multivalued: true candidate: name: candidate description: true if this is a proposed candidate constraint from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - TaxonConstraint range: boolean class_uri: rdf:Statement 
</details>

### Induced

<details>
```yaml
name: TaxonConstraint
description: An individual taxon constraint
from_schema: https://w3id.org/oak/taxon_constraints
attributes:
  subject:
    name: subject
    description: The term to which the constraint applies
    comments:
    - this is a reciprocal slot and will be the same as the containing SubjectTerm
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: rdf:subject
    alias: subject
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: SubjectTerm
  predicate:
    name: predicate
    description: The relationship type for the constraint (e.g. in_taxon, never_in
      taxon)
    todos:
    - define a value set of this
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: rdf:predicate
    alias: predicate
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: PredicateTerm
  asserted:
    name: asserted
    description: holds if the constraint is asserted in the source ontology, rather
      than inferred by rules or reasoning
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: asserted
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: boolean
  evolutionary:
    name: evolutionary
    description: holds if the constraint is an evolutionary statement
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: evolutionary
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: boolean
  redundant:
    name: redundant
    description: True if this is redundant within the set of constraints of the same
      type (never vs only)
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: redundant
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: boolean
  redundant_with_only_in:
    name: redundant_with_only_in
    description: True for never in constraints that are subsumed by an only in
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: redundant_with_only_in
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: boolean
  taxon:
    name: taxon
    description: The taxon which this constraint is about. May be species or a more
      general class.
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: rdf:object
    alias: taxon
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: Taxon
    inlined: true
  redundant_with:
    name: redundant_with
    description: If the taxon constraint is redundant, then this is the set of taxon
      constraints that it is redundant with
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: redundant_with
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: TaxonConstraint
    multivalued: true
  contradicted_by:
    name: contradicted_by
    description: If the taxon constraint conflicts with another,  then this is the
      set of taxon constraints that it is redundant with
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: contradicted_by
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: TaxonConstraint
    multivalued: true
  via_terms:
    name: via_terms
    description: For inferred taxon constraints, this is the term or terms that have
      the taxon constraint asserted
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: via_terms
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: SubjectTerm
    multivalued: true
    inlined: true
    inlined_as_list: true
  predicates:
    name: predicates
    description: The predicates that connect the subject term to the via_terms.
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: predicates
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: PredicateTerm
    multivalued: true
  sources:
    name: sources
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: sources
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: uriorcurie
    multivalued: true
  comments:
    name: comments
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: comments
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: string
    multivalued: true
  candidate:
    name: candidate
    description: true if this is a proposed candidate constraint
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: candidate
    owner: TaxonConstraint
    domain_of:
    - TaxonConstraint
    range: boolean
class_uri: rdf:Statement