Class: SubjectTerm

A term that is the subject of a taxon constraint. Typically comes from ontologies like GO, UBERON, CL, …

classDiagram class SubjectTerm click SubjectTerm href "../SubjectTerm" Term <|-- SubjectTerm click Term href "../Term" SubjectTerm : description SubjectTerm : id SubjectTerm : label SubjectTerm : never_in SubjectTerm --> "*" TaxonConstraint : never_in click TaxonConstraint href "../TaxonConstraint" SubjectTerm : only_in SubjectTerm --> "*" TaxonConstraint : only_in click TaxonConstraint href "../TaxonConstraint" SubjectTerm : present_in SubjectTerm --> "*" TaxonConstraint : present_in click TaxonConstraint href "../TaxonConstraint" SubjectTerm : present_in_ancestor_of SubjectTerm --> "*" TaxonConstraint : present_in_ancestor_of click TaxonConstraint href "../TaxonConstraint" SubjectTerm : unsatisfiable

Inheritance

Term
- SubjectTerm

Slots

Name	Cardinality and Range	Description	Inheritance
description	0..1 String	A description of the term	direct
unsatisfiable	0..1 Boolean	If true then some combination of taxon constraints plus ontology lead to cont…	direct
only_in	* TaxonConstraint	Points to a taxon constraint that states the SubjectTerm is ONLY found in a t…	direct
never_in	* TaxonConstraint	Points to a taxon constraint that states the SubjectTerm is NEVER found in a …	direct
present_in	* TaxonConstraint	The term MAY be in the specified taxon, or a descendant of that taxon	direct
present_in_ancestor_of	* TaxonConstraint		direct
id	1 Uriorcurie	the OBO CURIE for the term	Term
label	0..1 String	the human readable name or label of the term	Term

Usages

used by	used in	type	used
TaxonConstraint	subject	range	SubjectTerm
TaxonConstraint	via_terms	range	SubjectTerm

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/oak/taxon_constraints

Mappings

Mapping Type	Mapped Value
self	tc:SubjectTerm
native	tc:SubjectTerm

LinkML Source

Direct

```yaml name: SubjectTerm description: A term that is the subject of a taxon constraint. Typically comes from ontologies like GO, UBERON, CL, ... from_schema: https://w3id.org/oak/taxon_constraints is_a: Term attributes: description: name: description description: A description of the term from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - SubjectTerm unsatisfiable: name: unsatisfiable description: If true then some combination of taxon constraints plus ontology lead to contradictions from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - SubjectTerm range: boolean only_in: name: only_in description: 'Points to a taxon constraint that states the SubjectTerm is ONLY found in a taxon or descendant. Formally, the term AND its descendants MUST be in the specified taxon, or a descendant of that taxon

  '
comments:
- Note that we conflate between the RO "only in taxon" and "in taxon" relations
  here
from_schema: https://w3id.org/oak/taxon_constraints
rank: 1000
slot_uri: RO:0002160
domain_of:
- SubjectTerm
range: TaxonConstraint
multivalued: true

never_in: name: never_in description: ‘Points to a taxon constraint that states the SubjectTerm is NEVER found in a taxon or descendant. Formally, the term AND its descendants MUST NOT be in the specified taxon, or a descendant of that taxon

  '
from_schema: https://w3id.org/oak/taxon_constraints
rank: 1000
slot_uri: RO:0002161
domain_of:
- SubjectTerm
range: TaxonConstraint
multivalued: true

present_in: name: present_in description: ‘The term MAY be in the specified taxon, or a descendant of that taxon

  '
from_schema: https://w3id.org/oak/taxon_constraints
rank: 1000
slot_uri: RO:0002175
domain_of:
- SubjectTerm
range: TaxonConstraint
multivalued: true

present_in_ancestor_of: name: present_in_ancestor_of from_schema: https://w3id.org/oak/taxon_constraints rank: 1000 domain_of: - SubjectTerm range: TaxonConstraint multivalued: true

</details>

### Induced

<details>
```yaml
name: SubjectTerm
description: A term that is the subject of a taxon constraint. Typically comes from
  ontologies like GO, UBERON, CL, ...
from_schema: https://w3id.org/oak/taxon_constraints
is_a: Term
attributes:
  description:
    name: description
    description: A description of the term
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: description
    owner: SubjectTerm
    domain_of:
    - SubjectTerm
    range: string
  unsatisfiable:
    name: unsatisfiable
    description: If true then some combination of taxon constraints plus ontology
      lead to contradictions
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: unsatisfiable
    owner: SubjectTerm
    domain_of:
    - SubjectTerm
    range: boolean
  only_in:
    name: only_in
    description: 'Points to a taxon constraint that states the SubjectTerm is ONLY
      found in a taxon or descendant. Formally, the term AND its descendants MUST
      be in the specified taxon, or a descendant of that taxon

      '
    comments:
    - Note that we conflate between the RO "only in taxon" and "in taxon" relations
      here
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: RO:0002160
    alias: only_in
    owner: SubjectTerm
    domain_of:
    - SubjectTerm
    range: TaxonConstraint
    multivalued: true
  never_in:
    name: never_in
    description: 'Points to a taxon constraint that states the SubjectTerm is NEVER
      found in a taxon or descendant. Formally, the term AND its descendants MUST
      NOT be in the specified taxon, or a descendant of that taxon

      '
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: RO:0002161
    alias: never_in
    owner: SubjectTerm
    domain_of:
    - SubjectTerm
    range: TaxonConstraint
    multivalued: true
  present_in:
    name: present_in
    description: 'The term MAY be in the specified taxon, or a descendant of that
      taxon

      '
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: RO:0002175
    alias: present_in
    owner: SubjectTerm
    domain_of:
    - SubjectTerm
    range: TaxonConstraint
    multivalued: true
  present_in_ancestor_of:
    name: present_in_ancestor_of
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    alias: present_in_ancestor_of
    owner: SubjectTerm
    domain_of:
    - SubjectTerm
    range: TaxonConstraint
    multivalued: true
  id:
    name: id
    description: the OBO CURIE for the term
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    identifier: true
    alias: id
    owner: SubjectTerm
    domain_of:
    - Term
    range: uriorcurie
    required: true
  label:
    name: label
    description: the human readable name or label of the term
    from_schema: https://w3id.org/oak/taxon_constraints
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: SubjectTerm
    domain_of:
    - Term
    range: string