Ontology Metadata Ontology Schema

Schema for ontology metadata

URI: http://purl.obolibrary.org/obo/omo/schema

Name: Ontology-Metadata

Classes

Class

Description

Annotation

A reified property-object pair

AnnotationPropertyMixin

Groups all annotation property bundles

        HasCategory

None

        HasLifeCycle

None

        HasMappings

None

        HasMinimalMetadata

Absolute minimum metadata model

        HasProvenance

None

        HasSynonyms

a mixin for a class whose members can have synonyms

        HasUserInformation

None

Anonymous

Abstract root class for all anonymous (non-named; lacking an identifier) expressions

        AnonymousClassExpression

None

                Restriction

None

Any

None

Axiom

A logical or non-logical statement

Expression

None

        ClassExpression

None

        PropertyExpression

None

NotObsoleteAspect

Auto-classifies anything that is not obsolete

ObsoleteAspect

Auto-classifies anything that is obsolete

Thing

None

        NamedObject

Anything with an IRI

                Ontology

An OWL ontology

                Term

A NamedThing that includes classes, properties, but not ontologies

                        Class

None

                        NamedIndividual

An instance that has a IRI

                                Agent

None

                                HomoSapiens

An individual human being

                                Image

None

                        Property

None

                                AnnotationProperty

A property used in non-logical axioms

                                        Subset

A collection of terms grouped for some purpose

                                ObjectProperty

A property that connects two objects in logical axioms

                                        TransitiveProperty

An ObjectProperty with the property of transitivity

Slots

Slot

Description

allValuesFrom

alternative_term

annotatedProperty

annotatedSource

annotatedTarget

annotations

broadMatch

cardinality

category

changeNote

closeMatch

comment

complementOf

conformsTo

consider

contributor

core_property

abstract grouping of core properties

created

when the term came into being

created_by

creation_date

creator

curator_note

database_cross_reference

date

when the term was updated

date_retrieved

defaultLanguage

definition

definition_source

depicted_by

deprecated

disconnected_from

disjointWith

distinctMembers

domain

editor_note

editor_preferred_term

equivalentClass

equivalentProperty

evidence

exactMatch

example_of_usage

excluded_axiom

excluded_from_QC_check

excluded_subClassOf

excluded_synonym

external_ontology

has_alternative_id

Relates a live term to a deprecated ID that was merged in

has_axiom_label

has_broad_synonym

has_curation_status

has_exact_synonym

has_narrow_synonym

has_obo_namespace

has_obsolescence_reason

has_ontology_root_term

has_rank

has_related_synonym

has_synonym_type

hasValue

id

this maps to the URI in RDF

IEDB_alternative_term

image

imported_from

imports

in_subset

Maps an ontology element to a subset it belongs to

informative_property

intersectionOf

inverseOf

is_a_defining_property_chain_axiom

is_a_defining_property_chain_axiom_where_second_argument_is_reflexive

is_class_level

is_cyclic

is_inferred

is_metadata_tag

is_transitive

ISA_alternative_term

isDefinedBy

label

language

license

logical_predicate

match

match_aspect

maxQualifiedCardinality

members

minCardinality

minQualifiedCardinality

narrowMatch

NCIT_definition_source

NCIT_term_source

NCIT_term_type

never_in_taxon

notes

object

OBO_foundry_unique_label

oboInOwl_id

oboInOwl_ontology

obsoletion_related_property

Grouping class for all properties related to lifecycle

onClass

oneOf

onProperty

ontology_term_requester

page

predicate

propertyChainAxiom

provenance_property

qualifiedCardinality

range

reification_predicate

sameAs

seeAlso

shortcut_annotation_property

shorthand

should_conform_to

someValuesFrom

source

subClassOf

synonym

temporal_interpretation

term_editor

term_replaced_by

term_tracker_item

title

type

unionOf

url

version_property

versionInfo

versionIRI

Enumerations

Enumeration

Description

DefinitionConstraintComponent

An extension of SHACL constraint component for constraining definitions

Types

Type

Description

Boolean

A binary (true or false) value

Curie

a compact URI

CURIELiteral

A string representation of a CURIE

Date

a date (year, month and day) in an idealized calendar

DateOrDatetime

Either a date or a datetime

Datetime

The combination of a date and time

Decimal

A real number with arbitrary precision that conforms to the xsd:decimal speci…

Double

A real number that conforms to the xsd:double specification

Float

A real number that conforms to the xsd:float specification

Integer

An integer

IriType

An IRI

Jsonpath

A string encoding a JSON Path

Jsonpointer

A string encoding a JSON Pointer

LabelType

A string that provides a human-readable name for an entity

NarrativeText

A string that provides a human-readable description of something

Ncname

Prefix part of CURIE

Nodeidentifier

A URI, CURIE or BNODE that represents a node in a model

Objectidentifier

A URI or CURIE that represents an object in the model

Sparqlpath

A string encoding a SPARQL Property Path

String

A character string

TidyString

Time

A time object represents a (local) time of day, independent of any particular…

Uri

a complete URI

Uriorcurie

a URI or a CURIE

URLLiteral

A URL representation of a CURIE

Subsets

Subset

Description

AllotropePermittedProfile

AllotropeRequiredProfile

GoPermittedProfile

GoRecommendedProfile

GoRequiredProfile

ObiPermittedProfile

ObiRequiredProfile