Class: HasSynonyms

a mixin for a class whose members can have synonyms

URI: omoschema:HasSynonyms

classDiagram class HasSynonyms click HasSynonyms href "../HasSynonyms" AnnotationPropertyMixin <|-- HasSynonyms click AnnotationPropertyMixin href "../AnnotationPropertyMixin" HasSynonyms <|-- Term click Term href "../Term" HasSynonyms : alternative_term HasSynonyms : editor_preferred_term HasSynonyms : has_broad_synonym HasSynonyms : has_exact_synonym HasSynonyms : has_narrow_synonym HasSynonyms : has_related_synonym HasSynonyms : IEDB_alternative_term HasSynonyms : ISA_alternative_term HasSynonyms : OBO_foundry_unique_label

Inheritance

• AnnotationPropertyMixin

  • HasSynonyms

Slots

Name	Cardinality and Range	Description	Inheritance
has_exact_synonym	* LabelType		direct
has_narrow_synonym	* LabelType		direct
has_broad_synonym	* LabelType		direct
has_related_synonym	* LabelType		direct
alternative_term	* String		direct
ISA_alternative_term	* String		direct
IEDB_alternative_term	* String		direct
editor_preferred_term	* String		direct
OBO_foundry_unique_label	* String		direct

Mixin Usage

mixed into	description
Term	A NamedThing that includes classes, properties, but not ontologies

Comments

• the GO-style synonym model has four distinct scopes, with additional types as annotation axioms

• the OBI synonym model is to use alternative_term, or potentially a subproperty

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/oak/ontology-metadata

Mappings

Mapping Type	Mapped Value
self	omoschema:HasSynonyms
native	omoschema:HasSynonyms

LinkML Source

Direct

```yaml name: HasSynonyms description: a mixin for a class whose members can have synonyms comments: - the GO-style synonym model has four distinct scopes, with additional types as annotation axioms - the OBI synonym model is to use alternative_term, or potentially a subproperty from_schema: https://w3id.org/oak/ontology-metadata is_a: AnnotationPropertyMixin mixin: true slots: - has_exact_synonym - has_narrow_synonym - has_broad_synonym - has_related_synonym - alternative_term - ISA_alternative_term - IEDB_alternative_term - editor_preferred_term - OBO_foundry_unique_label

</details>

### Induced

<details>
```yaml
name: HasSynonyms
description: a mixin for a class whose members can have synonyms
comments:
- the GO-style synonym model has four distinct scopes, with additional types as annotation
  axioms
- the OBI synonym model is to use alternative_term, or potentially a subproperty
from_schema: https://w3id.org/oak/ontology-metadata
is_a: AnnotationPropertyMixin
mixin: true
attributes:
  has_exact_synonym:
    name: has_exact_synonym
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: synonym
    slot_uri: oio:hasExactSynonym
    alias: has_exact_synonym
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    - Axiom
    disjoint_with:
    - label
    range: label type
    multivalued: true
  has_narrow_synonym:
    name: has_narrow_synonym
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: synonym
    slot_uri: oio:hasNarrowSynonym
    alias: has_narrow_synonym
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: label type
    multivalued: true
  has_broad_synonym:
    name: has_broad_synonym
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: synonym
    slot_uri: oio:hasBroadSynonym
    alias: has_broad_synonym
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: label type
    multivalued: true
  has_related_synonym:
    name: has_related_synonym
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    slot_uri: oio:hasRelatedSynonym
    alias: has_related_synonym
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: label type
    multivalued: true
  alternative_term:
    name: alternative_term
    in_subset:
    - allotrope permitted profile
    from_schema: https://w3id.org/oak/ontology-metadata
    exact_mappings:
    - skos:altLabel
    rank: 1000
    slot_uri: IAO:0000118
    alias: alternative_term
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: string
    multivalued: true
  ISA_alternative_term:
    name: ISA_alternative_term
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: alternative_term
    slot_uri: OBI:0001847
    alias: ISA_alternative_term
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: string
    multivalued: true
  IEDB_alternative_term:
    name: IEDB_alternative_term
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: alternative_term
    slot_uri: OBI:9991118
    alias: IEDB_alternative_term
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: string
    multivalued: true
  editor_preferred_term:
    name: editor_preferred_term
    in_subset:
    - obi permitted profile
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: alternative_term
    slot_uri: IAO:0000111
    alias: editor_preferred_term
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: string
    multivalued: true
  OBO_foundry_unique_label:
    name: OBO_foundry_unique_label
    todos:
    - add uniquekey
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: alternative_term
    slot_uri: IAO:0000589
    alias: OBO_foundry_unique_label
    owner: HasSynonyms
    domain_of:
    - HasSynonyms
    range: string
    multivalued: true