Class: HasLifeCycle

URI: omoschema:HasLifeCycle

classDiagram class HasLifeCycle AnnotationPropertyMixin <|-- HasLifeCycle HasLifeCycle <|-- Term HasLifeCycle : consider HasLifeCycle --> Any : consider HasLifeCycle : deprecated HasLifeCycle : excluded_from_QC_check HasLifeCycle --> Thing : excluded_from_QC_check HasLifeCycle : excluded_subClassOf HasLifeCycle --> Class : excluded_subClassOf HasLifeCycle : excluded_synonym HasLifeCycle : has_alternative_id HasLifeCycle : has_obsolescence_reason HasLifeCycle : should_conform_to HasLifeCycle --> Thing : should_conform_to HasLifeCycle : term_replaced_by HasLifeCycle --> Any : term_replaced_by

Inheritance

AnnotationPropertyMixin
- HasLifeCycle

Slots

Name	Cardinality and Range	Description	Inheritance
deprecated	0..1 Boolean		direct
has_obsolescence_reason	0..1 String		direct
term_replaced_by	0..1 Any		direct
consider	0..* Any		direct
has_alternative_id	0..* Uriorcurie	Relates a live term to a deprecated ID that was merged in	direct
excluded_from_QC_check	0..1 Thing		direct
excluded_subClassOf	0..* Class		direct
excluded_synonym	0..* String		direct
should_conform_to	0..1 Thing		direct

Mixin Usage

mixed into	description
Term	A NamedThing that includes classes, properties, but not ontologies

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/oak/ontology-metadata

Mappings

Mapping Type	Mapped Value
self	omoschema:HasLifeCycle
native	omoschema:HasLifeCycle

LinkML Source

Direct

```yaml name: HasLifeCycle from_schema: https://w3id.org/oak/ontology-metadata is_a: AnnotationPropertyMixin mixin: true slots: - deprecated - has_obsolescence_reason - term_replaced_by - consider - has_alternative_id - excluded_from_QC_check - excluded_subClassOf - excluded_synonym - should_conform_to rules: - preconditions: slot_conditions: deprecated: name: deprecated equals_expression: 'true' postconditions: any_of: - slot_conditions: term_replaced_by: name: term_replaced_by required: true - slot_conditions: consider: name: consider required: true description: if a term is deprecated it should have either consider or replaced by - preconditions: none_of: - slot_conditions: deprecated: name: deprecated equals_expression: 'true' postconditions: none_of: - slot_conditions: term_replaced_by: name: term_replaced_by required: true - slot_conditions: consider: name: consider required: true description: if a term is not deprecated it should have neither consider nor replaced by - preconditions: slot_conditions: deprecated: name: deprecated equals_expression: 'true' postconditions: slot_conditions: label: name: label pattern: '^obsolete ' description: if a term is deprecated its label should start with the string obsolete

</details>

### Induced

<details>
```yaml
name: HasLifeCycle
from_schema: https://w3id.org/oak/ontology-metadata
is_a: AnnotationPropertyMixin
mixin: true
attributes:
  deprecated:
    name: deprecated
    in_subset:
    - allotrope permitted profile
    - go permitted profile
    - obi permitted profile
    from_schema: https://w3id.org/oak/ontology-metadata
    aliases:
    - is obsolete
    rank: 1000
    is_a: obsoletion_related_property
    domain: ObsoleteAspect
    slot_uri: owl:deprecated
    alias: deprecated
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: boolean
  has_obsolescence_reason:
    name: has_obsolescence_reason
    todos:
    - restrict range
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: obsoletion_related_property
    domain: ObsoleteAspect
    slot_uri: IAO:0000231
    alias: has_obsolescence_reason
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: string
  term_replaced_by:
    name: term_replaced_by
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    in_subset:
    - go permitted profile
    - obi permitted profile
    - allotrope permitted profile
    from_schema: https://w3id.org/oak/ontology-metadata
    exact_mappings:
    - dcterms:isReplacedBy
    rank: 1000
    is_a: obsoletion_related_property
    domain: ObsoleteAspect
    slot_uri: IAO:0100001
    alias: term_replaced_by
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: Any
  consider:
    name: consider
    comments:
    - '{''RULE'': ''subject must be deprecated''}'
    in_subset:
    - go permitted profile
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: obsoletion_related_property
    domain: ObsoleteAspect
    slot_uri: oio:consider
    multivalued: true
    alias: consider
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: Any
  has_alternative_id:
    name: has_alternative_id
    description: Relates a live term to a deprecated ID that was merged in
    deprecated: This is deprecated as it is redundant with the inverse replaced_by
      triple
    comments:
    - '{''RULE'': ''object must NOT be deprecated''}'
    in_subset:
    - go permitted profile
    from_schema: https://w3id.org/oak/ontology-metadata
    see_also:
    - https://github.com/owlcs/owlapi/issues/317
    rank: 1000
    is_a: obsoletion_related_property
    domain: NotObsoleteAspect
    slot_uri: oio:hasAlternativeId
    multivalued: true
    alias: has_alternative_id
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: uriorcurie
  excluded_from_QC_check:
    name: excluded_from_QC_check
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: excluded_axiom
    alias: excluded_from_QC_check
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: Thing
  excluded_subClassOf:
    name: excluded_subClassOf
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: excluded_axiom
    multivalued: true
    alias: excluded_subClassOf
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: Class
  excluded_synonym:
    name: excluded_synonym
    from_schema: https://w3id.org/oak/ontology-metadata
    exact_mappings:
    - skos:hiddenSynonym
    rank: 1000
    is_a: excluded_axiom
    multivalued: true
    alias: excluded_synonym
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: string
  should_conform_to:
    name: should_conform_to
    from_schema: https://w3id.org/oak/ontology-metadata
    rank: 1000
    is_a: excluded_axiom
    alias: should_conform_to
    owner: HasLifeCycle
    domain_of:
    - HasLifeCycle
    range: Thing
rules:
- preconditions:
    slot_conditions:
      deprecated:
        name: deprecated
        equals_expression: 'true'
  postconditions:
    any_of:
    - slot_conditions:
        term_replaced_by:
          name: term_replaced_by
          required: true
    - slot_conditions:
        consider:
          name: consider
          required: true
  description: if a term is deprecated it should have either consider or replaced
    by
- preconditions:
    none_of:
    - slot_conditions:
        deprecated:
          name: deprecated
          equals_expression: 'true'
  postconditions:
    none_of:
    - slot_conditions:
        term_replaced_by:
          name: term_replaced_by
          required: true
    - slot_conditions:
        consider:
          name: consider
          required: true
  description: if a term is not deprecated it should have neither consider nor replaced
    by
- preconditions:
    slot_conditions:
      deprecated:
        name: deprecated
        equals_expression: 'true'
  postconditions:
    slot_conditions:
      label:
        name: label
        pattern: '^obsolete '
  description: if a term is deprecated its label should start with the string obsolete