Class: AssociationChange

A change object describing a change between two associations.

classDiagram class AssociationChange click AssociationChange href "../AssociationChange" AssociationChange : aggregator_knowledge_source AssociationChange : closure_delta AssociationChange : closure_predicates AssociationChange : is_creation AssociationChange : is_deletion AssociationChange : is_generalization AssociationChange : is_migration AssociationChange : is_specialization AssociationChange : new_date AssociationChange : new_object AssociationChange : new_predicate AssociationChange : old_date AssociationChange : old_object AssociationChange : old_object_obsolete AssociationChange : old_predicate AssociationChange : primary_knowledge_source AssociationChange : publication_is_added AssociationChange : publication_is_deleted AssociationChange : publications AssociationChange : subject AssociationChange : summary_group

Slots

Name	Cardinality and Range	Description	Inheritance
summary_group	0..1 String	The field used to group an association diff summary	direct
old_date	0..1 String	The date of the old association	direct
new_date	0..1 String	The date of the new association	direct
primary_knowledge_source	0..1 Uriorcurie	The primary knowledge source for the association	direct
aggregator_knowledge_source	0..1 Uriorcurie	The knowledge source that aggregated the association	direct
publications	* Uriorcurie	The publications that support the association	direct
publication_is_added	0..1 Boolean	True if the publication was not present in the old association set (and prese…	direct
publication_is_deleted	0..1 Boolean	True if the publication is not present in the new association set (and presen…	direct
subject	0..1 Uriorcurie	The thing which the association is about	direct
old_predicate	0..1 Uriorcurie	If the association diff is a change in predicate, this is the predicate on th…	direct
new_predicate	0..1 Uriorcurie	If the association diff is a change in predicate, this is the predicate on th…	direct
old_object	0..1 Uriorcurie	The object (e	direct
new_object	0..1 Uriorcurie	The object (e	direct
old_object_obsolete	0..1 Boolean	if the object (e	direct
is_migration	0..1 Boolean	if the object (e	direct
is_generalization	0..1 Boolean	True if the association was inferred to become more general (based on closure…	direct
is_specialization	0..1 Boolean	True if the association was inferred to become more specific (based on closur…	direct
is_creation	0..1 Boolean		direct
is_deletion	0..1 Boolean		direct
closure_predicates	* Uriorcurie	The set of predicates used to determine if the new association object is a sp…	direct
closure_delta	0..1 Integer		direct

Comments

the change may be between associations in the same set at different times, or associations from different sources.

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/oak/association

Mappings

Mapping Type	Mapped Value
self	ontoassoc:AssociationChange
native	ontoassoc:AssociationChange

LinkML Source

Direct

```yaml name: AssociationChange description: A change object describing a change between two associations. comments: - the change may be between associations in the same set at different times, or associations from different sources. from_schema: https://w3id.org/oak/association slots: - summary_group - old_date - new_date - primary_knowledge_source - aggregator_knowledge_source - publications - publication_is_added - publication_is_deleted - subject - old_predicate - new_predicate - old_object - new_object - old_object_obsolete - is_migration - is_generalization - is_specialization - is_creation - is_deletion - closure_predicates - closure_delta

</details>

### Induced

<details>
```yaml
name: AssociationChange
description: A change object describing a change between two associations.
comments:
- the change may be between associations in the same set at different times, or associations
  from different sources.
from_schema: https://w3id.org/oak/association
attributes:
  summary_group:
    name: summary_group
    description: The field used to group an association diff summary
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: summary_group
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: string
  old_date:
    name: old_date
    description: The date of the old association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    is_a: date
    mixins:
    - diff_slot
    alias: old_date
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: string
  new_date:
    name: new_date
    description: The date of the new association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    is_a: date
    mixins:
    - diff_slot
    alias: new_date
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: string
  primary_knowledge_source:
    name: primary_knowledge_source
    description: The primary knowledge source for the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: biolink:primary_knowledge_source
    alias: primary_knowledge_source
    owner: AssociationChange
    domain_of:
    - PositiveOrNegativeAssociation
    - ParserConfiguration
    - AssociationChange
    range: uriorcurie
  aggregator_knowledge_source:
    name: aggregator_knowledge_source
    description: The knowledge source that aggregated the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: biolink:aggregator_knowledge_source
    alias: aggregator_knowledge_source
    owner: AssociationChange
    domain_of:
    - PositiveOrNegativeAssociation
    - ParserConfiguration
    - AssociationChange
    range: uriorcurie
  publications:
    name: publications
    description: The publications that support the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: biolink:publications
    alias: publications
    owner: AssociationChange
    domain_of:
    - PositiveOrNegativeAssociation
    - AssociationChange
    range: uriorcurie
    multivalued: true
  publication_is_added:
    name: publication_is_added
    description: True if the publication was not present in the old association set
      (and present in the new)
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: publication_is_added
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  publication_is_deleted:
    name: publication_is_deleted
    description: True if the publication is not present in the new association set
      (and present in the old)
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: publication_is_deleted
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  subject:
    name: subject
    description: The thing which the association is about.
    comments:
    - it is conventional for the subject to be the "entity" and the object to be the
      ontological descriptor
    from_schema: https://w3id.org/oak/association
    exact_mappings:
    - oa:hasBody
    rank: 1000
    slot_uri: rdf:subject
    alias: subject
    owner: AssociationChange
    domain_of:
    - PositiveOrNegativeAssociation
    - AssociationChange
    slot_group: core_triple
    range: uriorcurie
  old_predicate:
    name: old_predicate
    description: If the association diff is a change in predicate, this is the predicate
      on the old association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    is_a: predicate
    mixins:
    - diff_slot
    alias: old_predicate
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: uriorcurie
  new_predicate:
    name: new_predicate
    description: If the association diff is a change in predicate, this is the predicate
      on the new association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    is_a: predicate
    mixins:
    - diff_slot
    alias: new_predicate
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: uriorcurie
  old_object:
    name: old_object
    description: The object (e.g. term) on the old association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    is_a: object
    mixins:
    - diff_slot
    alias: old_object
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: uriorcurie
  new_object:
    name: new_object
    description: The object (e.g. term) on the new association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    is_a: object
    mixins:
    - diff_slot
    alias: new_object
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: uriorcurie
  old_object_obsolete:
    name: old_object_obsolete
    description: if the object (e.g. term) of the old object has been obsoleted, this
      is true
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: old_object_obsolete
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  is_migration:
    name: is_migration
    description: if the object (e.g. term) of the old object has been obsoleted, and
      the object has been migrated (either automatically or manually) to a new object
      based on obsoletion migration metadata, this is True
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: is_migration
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  is_generalization:
    name: is_generalization
    description: True if the association was inferred to become more general (based
      on closure predicates). Note that depending on the tool, this may be inferred,
      if there is no explicit association-level migration information.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: is_generalization
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  is_specialization:
    name: is_specialization
    description: True if the association was inferred to become more specific (based
      on closure predicates). Note that depending on the tool, this may be inferred,
      if there is no explicit association-level migration information.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: is_specialization
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  is_creation:
    name: is_creation
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: is_creation
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  is_deletion:
    name: is_deletion
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - diff_slot
    alias: is_deletion
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: boolean
  closure_predicates:
    name: closure_predicates
    description: The set of predicates used to determine if the new association object
      is a specialization or generalization of the old one.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: closure_predicates
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: uriorcurie
    multivalued: true
  closure_delta:
    name: closure_delta
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: closure_delta
    owner: AssociationChange
    domain_of:
    - AssociationChange
    range: integer