Class: ParserConfiguration

Settings that determine behavior when parsing associations.

URI: ontoassoc:ParserConfiguration

classDiagram class ParserConfiguration click ParserConfiguration href "../ParserConfiguration" ParserConfiguration : aggregator_knowledge_source ParserConfiguration : include_association_attributes ParserConfiguration : preserve_negated_associations ParserConfiguration : primary_knowledge_source

Slots

Name	Cardinality and Range	Description	Inheritance
preserve_negated_associations	0..1 Boolean	If true, then the parser will keep negated associations in the output	direct
include_association_attributes	0..1 Boolean	If true, then the parser will include non S/P/O properties as additional attr…	direct
primary_knowledge_source	0..1 Uriorcurie	The default primary knowledge source for all associations in this resource	direct
aggregator_knowledge_source	0..1 Uriorcurie	The default aggregator knowledge source for all associations in this resource	direct

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/oak/association

Mappings

Mapping Type	Mapped Value
self	ontoassoc:ParserConfiguration
native	ontoassoc:ParserConfiguration

LinkML Source

Direct

```yaml name: ParserConfiguration description: Settings that determine behavior when parsing associations. from_schema: https://w3id.org/oak/association attributes: preserve_negated_associations: name: preserve_negated_associations description: 'If true, then the parser will keep negated associations in the output.

  If false, then the parser will remove negated associations from the output.'
comments:
- Note that to be defensive most applications should leave the default as false
from_schema: https://w3id.org/oak/association
rank: 1000
domain_of:
- ParserConfiguration
range: boolean

include_association_attributes: name: include_association_attributes description: ‘If true, then the parser will include non S/P/O properties as additional attributes.

  This may result in slower parsing'
from_schema: https://w3id.org/oak/association
rank: 1000
domain_of:
- ParserConfiguration
range: boolean

primary_knowledge_source: name: primary_knowledge_source description: The default primary knowledge source for all associations in this resource. from_schema: https://w3id.org/oak/association slot_uri: biolink:primary_knowledge_source domain_of: - PositiveOrNegativeAssociation - ParserConfiguration - AssociationChange range: uriorcurie aggregator_knowledge_source: name: aggregator_knowledge_source description: The default aggregator knowledge source for all associations in this resource. from_schema: https://w3id.org/oak/association slot_uri: biolink:aggregator_knowledge_source domain_of: - PositiveOrNegativeAssociation - ParserConfiguration - AssociationChange range: uriorcurie

</details>

### Induced

<details>
```yaml
name: ParserConfiguration
description: Settings that determine behavior when parsing associations.
from_schema: https://w3id.org/oak/association
attributes:
  preserve_negated_associations:
    name: preserve_negated_associations
    description: 'If true, then the parser will keep negated associations in the output.

      If false, then the parser will remove negated associations from the output.'
    comments:
    - Note that to be defensive most applications should leave the default as false
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: preserve_negated_associations
    owner: ParserConfiguration
    domain_of:
    - ParserConfiguration
    range: boolean
  include_association_attributes:
    name: include_association_attributes
    description: 'If true, then the parser will include non S/P/O properties as additional
      attributes.

      This may result in slower parsing'
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: include_association_attributes
    owner: ParserConfiguration
    domain_of:
    - ParserConfiguration
    range: boolean
  primary_knowledge_source:
    name: primary_knowledge_source
    description: The default primary knowledge source for all associations in this
      resource.
    from_schema: https://w3id.org/oak/association
    slot_uri: biolink:primary_knowledge_source
    alias: primary_knowledge_source
    owner: ParserConfiguration
    domain_of:
    - PositiveOrNegativeAssociation
    - ParserConfiguration
    - AssociationChange
    range: uriorcurie
  aggregator_knowledge_source:
    name: aggregator_knowledge_source
    description: The default aggregator knowledge source for all associations in this
      resource.
    from_schema: https://w3id.org/oak/association
    slot_uri: biolink:aggregator_knowledge_source
    alias: aggregator_knowledge_source
    owner: ParserConfiguration
    domain_of:
    - PositiveOrNegativeAssociation
    - ParserConfiguration
    - AssociationChange
    range: uriorcurie