Class: Graph

A graph is a collection of nodes and edges and other axioms that represents a single ontology.

URI: owl:Ontology

classDiagram class Graph click Graph href "../Graph" Graph : allValuesFromEdges Graph --> "*" Edge : allValuesFromEdges click Edge href "../Edge" Graph : domainRangeAxioms Graph --> "*" DomainRangeAxiom : domainRangeAxioms click DomainRangeAxiom href "../DomainRangeAxiom" Graph : edges Graph --> "*" Edge : edges click Edge href "../Edge" Graph : equivalentNodesSets Graph --> "*" EquivalentNodesSet : equivalentNodesSets click EquivalentNodesSet href "../EquivalentNodesSet" Graph : id Graph : lbl Graph : logicalDefinitionAxioms Graph --> "*" LogicalDefinitionAxiom : logicalDefinitionAxioms click LogicalDefinitionAxiom href "../LogicalDefinitionAxiom" Graph : meta Graph --> "0..1" Meta : meta click Meta href "../Meta" Graph : nodes Graph --> "*" Node : nodes click Node href "../Node" Graph : prefixes Graph --> "*" PrefixDeclaration : prefixes click PrefixDeclaration href "../PrefixDeclaration" Graph : propertyChainAxioms Graph --> "*" PropertyChainAxiom : propertyChainAxioms click PropertyChainAxiom href "../PropertyChainAxiom" Graph : subsetDefinitions Graph --> "*" SubsetDefinition : subsetDefinitions click SubsetDefinition href "../SubsetDefinition" Graph : synonymTypeDefinitions Graph --> "*" SynonymTypeDefinition : synonymTypeDefinitions click SynonymTypeDefinition href "../SynonymTypeDefinition"

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 OboIdentifierString	The unique identifier of the entity	direct
lbl	0..1 String	the human-readable label of a node	direct
prefixes	* PrefixDeclaration	A collection of mappings between prefixes and namespaces, used to map CURIEs …	direct
subsetDefinitions	* SubsetDefinition		direct
synonymTypeDefinitions	* SynonymTypeDefinition		direct
meta	0..1 Meta	A collection of metadata about either an ontology (graph), an entity, or an a…	direct
nodes	* Node	All nodes present in a graph	direct
edges	* Edge	All edges present in a graph	direct
equivalentNodesSets	* EquivalentNodesSet	A list of sets of nodes that form equivalence cliques	direct
logicalDefinitionAxioms	* LogicalDefinitionAxiom	A list of logical definition axioms that define the meaning of a class in ter…	direct
domainRangeAxioms	* DomainRangeAxiom	A list of axioms that define the domain and range of a property	direct
allValuesFromEdges	* Edge	A list of edges that represent subclasses of universal restrictions	direct
propertyChainAxioms	* PropertyChainAxiom	A list of axioms that define an OWL property chain	direct

Usages

used by	used in	type	used
GraphDocument	graphs	range	Graph

Identifier and Mapping Information

Schema Source

• from schema: https://github.com/geneontology/obographs

Mappings

Mapping Type	Mapped Value
self	owl:Ontology
native	obographs:Graph

LinkML Source

Direct

```yaml name: Graph description: A graph is a collection of nodes and edges and other axioms that represents a single ontology. from_schema: https://github.com/geneontology/obographs slots: - id - lbl - prefixes - subsetDefinitions - synonymTypeDefinitions - meta - nodes - edges - equivalentNodesSets - logicalDefinitionAxioms - domainRangeAxioms - allValuesFromEdges - propertyChainAxioms class_uri: owl:Ontology

</details>

### Induced

<details>
```yaml
name: Graph
description: A graph is a collection of nodes and edges and other axioms that represents
  a single ontology.
from_schema: https://github.com/geneontology/obographs
attributes:
  id:
    name: id
    description: The unique identifier of the entity
    from_schema: https://github.com/geneontology/obographs
    see_also:
    - https://owlcollab.github.io/oboformat/doc/obo-syntax.html#2.5
    rank: 1000
    identifier: true
    alias: id
    owner: Graph
    domain_of:
    - Graph
    - Node
    - SubsetDefinition
    - SynonymTypeDefinition
    range: OboIdentifierString
    required: true
  lbl:
    name: lbl
    description: the human-readable label of a node
    comments:
    - the name "lbl" exists for legacy purposes, this should be considered identical
      to label in rdfs
    from_schema: https://github.com/geneontology/obographs
    aliases:
    - label
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: lbl
    owner: Graph
    domain_of:
    - Graph
    - Node
    - SubsetDefinition
    - SynonymTypeDefinition
    range: string
  prefixes:
    name: prefixes
    description: A collection of mappings between prefixes and namespaces, used to
      map CURIEs (e.g. GO:0008150) to IRIs (e.g. http://purl.obolibrary.org/obo/GO_0008150)
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    slot_uri: sh:declare
    alias: prefixes
    owner: Graph
    domain_of:
    - GraphDocument
    - Graph
    range: PrefixDeclaration
    multivalued: true
    inlined: true
  subsetDefinitions:
    name: subsetDefinitions
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: subsetDefinitions
    owner: Graph
    domain_of:
    - Graph
    range: SubsetDefinition
    multivalued: true
    inlined: true
  synonymTypeDefinitions:
    name: synonymTypeDefinitions
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: synonymTypeDefinitions
    owner: Graph
    domain_of:
    - Graph
    range: SynonymTypeDefinition
    multivalued: true
    inlined: true
  meta:
    name: meta
    description: A collection of metadata about either an ontology (graph), an entity,
      or an axiom
    from_schema: https://github.com/geneontology/obographs
    aliases:
    - annotations
    rank: 1000
    alias: meta
    owner: Graph
    domain_of:
    - GraphDocument
    - Graph
    - Node
    - Edge
    - PropertyValue
    - Axiom
    range: Meta
  nodes:
    name: nodes
    description: All nodes present in a graph. This includes class nodes as well as
      supporting nodes, including nodes representing relationship types, subsets,
      annotation properties, etc
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: nodes
    owner: Graph
    domain_of:
    - Graph
    range: Node
    multivalued: true
    inlined: true
    inlined_as_list: true
  edges:
    name: edges
    description: All edges present in a graph.
    comments:
    - Note that this only includes core edges, formed by translating (a) SubClassOf
      between named classes (b) SubPropertyOf (c) SubClassOf between a named class
      and a simple existential axiom (d) ObjectPropertyAssertions
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: edges
    owner: Graph
    domain_of:
    - Graph
    range: Edge
    multivalued: true
    inlined: true
    inlined_as_list: true
  equivalentNodesSets:
    name: equivalentNodesSets
    description: A list of sets of nodes that form equivalence cliques
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: equivalentNodesSets
    owner: Graph
    domain_of:
    - Graph
    range: EquivalentNodesSet
    multivalued: true
  logicalDefinitionAxioms:
    name: logicalDefinitionAxioms
    description: A list of logical definition axioms that define the meaning of a
      class in terms of other classes.
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: logicalDefinitionAxioms
    owner: Graph
    domain_of:
    - Graph
    range: LogicalDefinitionAxiom
    multivalued: true
    inlined: true
    inlined_as_list: true
  domainRangeAxioms:
    name: domainRangeAxioms
    description: A list of axioms that define the domain and range of a property
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: domainRangeAxioms
    owner: Graph
    domain_of:
    - Graph
    range: DomainRangeAxiom
    multivalued: true
  allValuesFromEdges:
    name: allValuesFromEdges
    description: A list of edges that represent subclasses of universal restrictions
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: allValuesFromEdges
    owner: Graph
    domain_of:
    - Graph
    - DomainRangeAxiom
    range: Edge
    multivalued: true
  propertyChainAxioms:
    name: propertyChainAxioms
    description: A list of axioms that define an OWL property chain
    from_schema: https://github.com/geneontology/obographs
    rank: 1000
    alias: propertyChainAxioms
    owner: Graph
    domain_of:
    - Graph
    range: PropertyChainAxiom
    multivalued: true
class_uri: owl:Ontology