Class: PositiveOrNegativeAssociation

  • NOTE: this is an abstract class and should not be instantiated directly

URI: ontoassoc:PositiveOrNegativeAssociation

classDiagram class PositiveOrNegativeAssociation click PositiveOrNegativeAssociation href "../PositiveOrNegativeAssociation" PositiveOrNegativeAssociation <|-- Association click Association href "../Association" PositiveOrNegativeAssociation <|-- NegatedAssociation click NegatedAssociation href "../NegatedAssociation" PositiveOrNegativeAssociation : aggregator_knowledge_source PositiveOrNegativeAssociation : comments PositiveOrNegativeAssociation : evidence_type PositiveOrNegativeAssociation : negated PositiveOrNegativeAssociation : object PositiveOrNegativeAssociation : object_closure PositiveOrNegativeAssociation : object_closure_label PositiveOrNegativeAssociation : object_label PositiveOrNegativeAssociation : predicate PositiveOrNegativeAssociation : predicate_label PositiveOrNegativeAssociation : primary_knowledge_source PositiveOrNegativeAssociation : property_values PositiveOrNegativeAssociation --> "*" PropertyValue : property_values click PropertyValue href "../PropertyValue" PositiveOrNegativeAssociation : publications PositiveOrNegativeAssociation : subject PositiveOrNegativeAssociation : subject_closure PositiveOrNegativeAssociation : subject_closure_label PositiveOrNegativeAssociation : subject_label PositiveOrNegativeAssociation : supporting_objects

Inheritance

Slots

Name

Cardinality and Range

Description

Inheritance

subject

0..1
Uriorcurie

The thing which the association is about

direct

predicate

0..1
Uriorcurie

The type of relationship between the subject and object

direct

object

0..1
Uriorcurie

An ontology entity that is associated with the subject

direct

property_values

*
PropertyValue

Arbitrary key-value pairs with additional information about the association

direct

subject_label

0..1
String

The label of the thing which the association is about

direct

predicate_label

0..1
String

The label of the type of relationship between the subject and object

direct

object_label

0..1
String

The label of the ontology entity that is associated with the subject

direct

negated

0..1
Boolean

True if the association is negated - i

direct

publications

*
Uriorcurie

The publications that support the association

direct

evidence_type

0..1
Uriorcurie

The type of evidence supporting the association

direct

supporting_objects

*
Uriorcurie

The objects that support the association

direct

primary_knowledge_source

0..1
Uriorcurie

The primary knowledge source for the association

direct

aggregator_knowledge_source

0..1
Uriorcurie

The knowledge source that aggregated the association

direct

subject_closure

*
Uriorcurie

The set of subjects that are related to the subject of the association via th…

direct

subject_closure_label

*
String

The set of subjects that are related to the subject of the association via th…

direct

object_closure

*
Uriorcurie

The set of objects that are related to the object of the association via the …

direct

object_closure_label

*
String

The set of objects that are related to the object of the association via the …

direct

comments

*
String

Comments about the association

direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/oak/association

Mappings

Mapping Type

Mapped Value

self

ontoassoc:PositiveOrNegativeAssociation

native

ontoassoc:PositiveOrNegativeAssociation

LinkML Source

Direct

```yaml name: PositiveOrNegativeAssociation from_schema: https://w3id.org/oak/association abstract: true slots: - subject - predicate - object - property_values - subject_label - predicate_label - object_label - negated - publications - evidence_type - supporting_objects - primary_knowledge_source - aggregator_knowledge_source - subject_closure - subject_closure_label - object_closure - object_closure_label - comments 
</details>

### Induced

<details>
```yaml
name: PositiveOrNegativeAssociation
from_schema: https://w3id.org/oak/association
abstract: true
attributes:
  subject:
    name: subject
    description: The thing which the association is about.
    comments:
    - it is conventional for the subject to be the "entity" and the object to be the
      ontological descriptor
    from_schema: https://w3id.org/oak/association
    exact_mappings:
    - oa:hasBody
    rank: 1000
    slot_uri: rdf:subject
    alias: subject
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    - AssociationChange
    slot_group: core_triple
    range: uriorcurie
  predicate:
    name: predicate
    description: The type of relationship between the subject and object.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: rdf:predicate
    alias: predicate
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    - PropertyValue
    slot_group: core_triple
    range: uriorcurie
  object:
    name: object
    description: An ontology entity that is associated with the subject.
    comments:
    - it is conventional for the subject to be the "entity" and the object to be the
      ontological descriptor
    from_schema: https://w3id.org/oak/association
    exact_mappings:
    - oa:hasTarget
    rank: 1000
    slot_uri: rdf:object
    alias: object
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    - PropertyValue
    slot_group: core_triple
    range: uriorcurie
  property_values:
    name: property_values
    description: Arbitrary key-value pairs with additional information about the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: property_values
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: PropertyValue
    multivalued: true
    inlined: true
  subject_label:
    name: subject_label
    description: The label of the thing which the association is about.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - denormalized_slot
    slot_uri: sssom:subject_label
    alias: subject_label
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: string
  predicate_label:
    name: predicate_label
    description: The label of the type of relationship between the subject and object.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - denormalized_slot
    slot_uri: sssom:predicate_label
    alias: predicate_label
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: string
  object_label:
    name: object_label
    description: The label of the ontology entity that is associated with the subject.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    mixins:
    - denormalized_slot
    slot_uri: sssom:object_label
    alias: object_label
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: string
  negated:
    name: negated
    description: True if the association is negated - i.e the core triple is not true.
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: negated
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: boolean
  publications:
    name: publications
    description: The publications that support the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: biolink:publications
    alias: publications
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    - AssociationChange
    range: uriorcurie
    multivalued: true
  evidence_type:
    name: evidence_type
    description: The type of evidence supporting the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: evidence_type
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: uriorcurie
  supporting_objects:
    name: supporting_objects
    description: The objects that support the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: supporting_objects
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: uriorcurie
    multivalued: true
  primary_knowledge_source:
    name: primary_knowledge_source
    description: The primary knowledge source for the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: biolink:primary_knowledge_source
    alias: primary_knowledge_source
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    - ParserConfiguration
    - AssociationChange
    range: uriorcurie
  aggregator_knowledge_source:
    name: aggregator_knowledge_source
    description: The knowledge source that aggregated the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: biolink:aggregator_knowledge_source
    alias: aggregator_knowledge_source
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    - ParserConfiguration
    - AssociationChange
    range: uriorcurie
  subject_closure:
    name: subject_closure
    description: The set of subjects that are related to the subject of the association
      via the closure predicates
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: subject_closure
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: uriorcurie
    multivalued: true
  subject_closure_label:
    name: subject_closure_label
    description: The set of subjects that are related to the subject of the association
      via the closure predicates
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: subject_closure_label
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: string
    multivalued: true
  object_closure:
    name: object_closure
    description: The set of objects that are related to the object of the association
      via the closure predicates
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: object_closure
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: uriorcurie
    multivalued: true
  object_closure_label:
    name: object_closure_label
    description: The set of objects that are related to the object of the association
      via the closure predicates
    from_schema: https://w3id.org/oak/association
    rank: 1000
    alias: object_closure_label
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: string
    multivalued: true
  comments:
    name: comments
    description: Comments about the association
    from_schema: https://w3id.org/oak/association
    rank: 1000
    slot_uri: rdfs:comment
    alias: comments
    owner: PositiveOrNegativeAssociation
    domain_of:
    - PositiveOrNegativeAssociation
    range: string
    multivalued: true